- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.3: 32 residues within 4Å:- Chain A: T.38, F.41, A.42, I.49, I.89, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.148, G.149, I.150, H.153, L.238, V.241
- Chain B: Y.210, A.213, L.214, A.217, M.218, W.252, T.255, M.256
- Ligands: BCL.1, BCL.2, U10.12
20 PLIP interactions:16 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:A.42, A:I.49, A:I.89, A:A.93, A:A.96, A:A.120, A:F.121, A:F.121, A:F.123, A:A.124, A:Y.148, A:Y.148, A:Y.148, A:L.238, A:V.241, B:Y.210, B:A.213, B:L.214, B:A.217
- pi-Stacking: A:F.121
BPH.11: 25 residues within 4Å:- Chain A: F.181, A.184, L.185, L.189, L.219, V.220
- Chain B: S.59, L.60, G.63, L.64, F.67, A.125, V.126, W.129, T.133, T.146, A.149, F.150, A.153, A.273, V.274, T.277
- Ligands: U10.4, BCL.9, BCL.10
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:L.60, B:L.64, B:F.67, B:A.125, B:W.129, B:A.149, B:F.150, B:F.150, B:T.277, A:A.184, A:L.185, A:L.189
- pi-Stacking: B:F.150
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.4: 15 residues within 4Å:- Chain A: T.182, A.186, L.189, H.190, L.193, F.216, V.220, Y.222, S.223, I.224, I.229, L.232
- Chain B: I.50, W.129
- Ligands: BPH.11
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:I.50, B:W.129, A:T.182, A:L.189, A:V.220, A:L.232
- Hydrogen bonds: A:I.224
U10.12: 30 residues within 4Å:- Chain A: F.29, Y.30, V.31, G.35, T.38, F.39, W.100, R.103
- Chain B: L.214, M.218, H.219, T.222, I.223, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BCL.1, BCL.2, BPH.3, HTO.6, LDA.18
20 PLIP interactions:12 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:L.214, B:M.218, B:W.252, B:M.256, B:F.258, B:F.258, B:A.260, B:I.265, B:W.268, B:W.268, A:F.29, A:F.29, A:V.31, A:T.38, A:F.39, A:W.100, A:W.100, A:W.100
- Hydrogen bonds: B:T.222, B:A.260
- 2 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
HTO.5: 5 residues within 4Å:- Chain A: A.101, V.105, P.118, F.119, A.122
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.101, A:A.122
HTO.6: 5 residues within 4Å:- Chain A: F.29
- Chain B: G.257, F.258
- Ligands: U10.12, LDA.18
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.258, B:F.258
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x SPO: SPHEROIDENE(Non-covalent)
SPO.13: 23 residues within 4Å:- Chain B: F.67, F.68, I.70, G.71, W.75, F.85, L.89, S.119, F.120, M.122, F.123, W.157, M.158, L.160, G.161, F.162, W.171, V.175, Y.177, G.178, I.179, H.182
- Ligands: BCL.9
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:F.67, B:F.67, B:F.68, B:I.70, B:I.70, B:F.85, B:L.89, B:F.120, B:F.123, B:W.157, B:L.160, B:F.162, B:W.171, B:V.175, B:V.175, B:I.179, B:H.182
- 3 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.14: 10 residues within 4Å:- Chain B: P.200, G.203, L.204, A.207, F.208, W.268
- Chain C: W.21, L.31
- Ligands: BCL.2, LDA.18
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:L.204, B:A.207, B:F.208, B:W.268, C:L.31
- Hydrogen bonds: B:P.200
- Water bridges: B:G.203
LDA.15: 5 residues within 4Å:- Chain B: F.7, L.38, L.39, W.41, F.42
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.7, B:F.7, B:L.38, B:F.42
- pi-Cation interactions: B:F.7, B:W.41, B:W.41
LDA.18: 11 residues within 4Å:- Chain B: R.253, W.268
- Chain C: I.28, Q.32, Y.40, Q.53, G.54, F.56
- Ligands: HTO.6, U10.12, LDA.14
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:I.28, C:F.56, B:W.268
- Hydrogen bonds: C:Y.40
- Water bridges: C:Q.32
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.16: 9 residues within 4Å:- Chain A: N.199, P.200
- Chain B: G.143, K.144, H.145, W.148, R.267, W.271
- Chain C: Y.30
14 PLIP interactions:1 interactions with chain A, 3 interactions with chain C, 10 interactions with chain B- Water bridges: A:N.199, C:Y.30, C:K.62, B:K.144, B:R.267
- Hydrophobic interactions: C:Y.30, B:W.148, B:W.148, B:W.148, B:W.271
- Hydrogen bonds: B:K.144
- Salt bridges: B:H.145, B:H.145, B:R.267
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Xu, Q. et al., X-Ray Structure Determination of Three Mutants of the Bacterial Photosynthetic Reaction Centers from Rb. sphaeroides; Altered Proton Transfer Pathways. STRUCTURE (2004)
- Release Date
- 2004-04-13
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
H - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 1rzh.1
PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROM RHODOBACTER SPHAEROIDES WITH ASP L213 REPLACED WITH ASN AND ARG M233 REPLACED WITH CYS IN THE CHARGE-NEUTRAL DQAQB STATE (TRIGONAL FORM)
Reaction center protein L chain
Reaction center protein M chain
Reaction center protein H chain
Related Entries With Identical Sequence
1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1pcr.1 | 1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1rvj.1 | 1ry5.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 more...less...1yf6.1 |
1yst.1 |
1z9j.1 |
1z9k.1 |
1z9k.2 |
2bnp.1 |
2bns.1 |
2boz.1 |
2gmr.1 |
2hg3.1 |
2hg9.1 |
2hh1.1 |
2hhk.1 |
2hit.1 |
2hj6.1 |
2j8c.1 |
2j8d.1 |
2jiy.1 |
2jj0.1 |
2rcr.1 |
2uws.1 |
2uwt.1 |
2uwu.1 |
2uwv.1 |
2uww.1 |
2ux3.1 |
2ux4.1 |
2ux5.1 |
2uxj.1 |
2uxk.1 |
2uxl.1 |
2uxm.1 |
2wx5.1 |
3dsy.1 |
3dta.1 |
3dtr.1 |
3dts.1 |
3du2.1 |
3du3.1 |
3duq.1 |
3i4d.1 |
3zum.1 |
3zuw.1 |
4h99.1 |
4h9l.1 |
4hbh.1 |
4hbj.1 |
4lwy.1 |
4rcr.1 |
4v9g.30 |
4v9g.62 |
5lri.1 |
5lse.1