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SMTL ID : 1uzu.1
Glycogen Phosphorylase b in complex with indirubin-5'-sulphonate
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
15 residues within 4Å:
Chain A:
Y.90
,
G.134
,
G.135
,
R.138
,
W.491
,
V.567
,
K.568
,
K.574
,
Y.648
,
R.649
,
V.650
,
G.675
,
T.676
,
G.677
,
K.680
17
PLIP interactions
:
17 interactions with chain A
Hydrophobic interactions:
A:Y.90
,
A:Y.648
,
A:V.650
,
A:K.680
Hydrogen bonds:
A:T.676
,
A:T.676
,
A:G.677
Water bridges:
A:Y.90
,
A:K.568
,
A:K.574
,
A:K.574
,
A:K.574
,
A:G.675
,
A:N.678
,
A:N.678
Salt bridges:
A:K.568
,
A:K.574
PLP.3:
15 residues within 4Å:
Chain B:
Y.90
,
G.134
,
G.135
,
R.138
,
W.491
,
V.567
,
K.568
,
K.574
,
Y.648
,
R.649
,
V.650
,
G.675
,
T.676
,
G.677
,
K.680
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:Y.90
,
B:Y.648
,
B:V.650
,
B:K.680
Hydrogen bonds:
B:Y.648
,
B:T.676
,
B:T.676
,
B:G.677
Water bridges:
B:K.568
,
B:K.574
,
B:K.574
,
B:K.574
,
B:G.675
,
B:N.678
,
B:N.678
Salt bridges:
B:K.568
,
B:K.574
2 x
INR
:
2',3-DIOXO-1,1',2',3-TETRAHYDRO-2,3'-BIINDOLE-5'-SULFONIC ACID
(Non-covalent)
INR.2:
8 residues within 4Å:
Chain A:
N.282
,
F.285
,
E.287
,
E.382
,
E.572
,
A.610
,
G.612
,
Y.613
8
PLIP interactions
:
8 interactions with chain A
Hydrophobic interactions:
A:F.285
,
A:F.285
Hydrogen bonds:
A:N.282
,
A:G.612
Water bridges:
A:G.612
pi-Stacking:
A:F.285
,
A:Y.613
,
A:Y.613
INR.4:
8 residues within 4Å:
Chain B:
N.282
,
F.285
,
E.287
,
E.382
,
E.572
,
A.610
,
G.612
,
Y.613
8
PLIP interactions
:
8 interactions with chain B
Hydrophobic interactions:
B:F.285
,
B:F.285
Hydrogen bonds:
B:N.282
,
B:G.612
Water bridges:
B:G.612
pi-Stacking:
B:F.285
,
B:Y.613
,
B:Y.613
Links
RCSB
PDBe
PDBj
PDBsum
CATH
PLIP
Citation
Kosmopoulou, M.N. et al., Binding of the potential antitumour agent indirubin-5-sulphonate at the inhibitor site of rabbit muscle glycogen phosphorylase b. Comparison with ligand binding to pCDK2-cyclin A complex. Eur. J. Biochem. (2004)
Release Date
2004-05-27
Peptides
GLYCOGEN PHOSPHORYLASE, MUSCLE FORM:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
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Secondary Structure
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GLYCOGEN PHOSPHORYLASE, MUSCLE FORM
Toggle Identical (AB)
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|
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|
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|
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|
3t3d.1
|
3t3e.1
|
3t3g.1
|
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|
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|
5lrc.1
|
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|
5lrf.1
|
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|
6y5c.1
|
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