- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.3: 15 residues within 4Å:- Chain A: I.175, S.178, F.179, L.189, H.190, L.193, A.213, F.216, Y.222, S.223, I.224, G.225, I.229, L.232
- Ligands: BCL.6
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:I.175, A:F.179, A:L.189, A:F.216, A:F.216, A:F.216, A:Y.222
- Hydrogen bonds: A:I.224, A:G.225
U10.10: 20 residues within 4Å:- Chain A: G.35, W.100
- Chain B: M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, A.260, M.262, I.265, W.268, M.272
- Ligands: BCL.2, BPH.5, LDA.14, LDA.15
14 PLIP interactions:11 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:M.218, B:W.252, B:M.256, B:F.258, B:F.258, B:A.260, B:I.265, B:W.268, B:W.268, A:W.100, A:W.100, A:W.100
- Hydrogen bonds: B:T.222, B:A.260
- 4 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.4: 7 residues within 4Å:- Chain A: L.75, G.76, G.77, T.90, I.91, T.94, W.142
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:T.90, A:I.91, A:T.94, A:W.142, A:W.142
LDA.13: 9 residues within 4Å:- Chain B: P.200, L.204, A.207, F.208, W.268, M.272
- Chain C: W.21
- Ligands: BCL.2, LDA.15
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.204, B:A.207, B:F.208, B:W.268
LDA.14: 4 residues within 4Å:- Chain A: P.28
- Chain B: M.256, F.258
- Ligands: U10.10
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:P.28, B:F.258
LDA.15: 7 residues within 4Å:- Chain B: G.257, F.258
- Chain C: Q.32, Y.40, Q.53
- Ligands: U10.10, LDA.13
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.258, B:F.258, B:F.258
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.5: 25 residues within 4Å:- Chain A: F.41, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, A.124, Y.128, G.149, I.150, H.153, L.238, V.241
- Chain B: Y.210, A.213, L.214, M.218, W.252, M.256
- Ligands: BCL.1, BCL.2, U10.10
10 PLIP interactions:2 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:A.213, B:L.214, A:A.96, A:A.120, A:F.121, A:A.124, A:L.238, A:V.241, A:V.241
- pi-Stacking: A:F.121
BPH.7: 21 residues within 4Å:- Chain A: F.181, A.184, L.185, A.188, L.189, V.220
- Chain B: S.59, G.63, F.67, A.125, V.126, W.129, T.146, A.149, F.150, S.152, A.153, A.273, T.277
- Ligands: BCL.6, BCL.8
13 PLIP interactions:3 interactions with chain A, 10 interactions with chain B- Hydrophobic interactions: A:A.184, A:A.188, A:L.189, B:F.67, B:F.67, B:F.67, B:A.125, B:A.149, B:F.150, B:F.150, B:A.153, B:T.277
- pi-Stacking: B:F.150
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x SPN: SPEROIDENONE(Non-covalent)
SPN.11: 20 residues within 4Å:- Chain B: W.66, F.67, I.70, G.71, F.74, W.75, F.85, W.115, S.119, M.122, W.157, L.160, G.161, F.162, V.175, Y.177, G.178, I.179, H.182
- Ligands: BCL.6
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:W.66, B:F.67, B:F.67, B:F.67, B:I.70, B:I.70, B:F.74, B:F.74, B:F.85, B:W.115, B:W.157, B:L.160, B:F.162, B:F.162, B:F.162, B:V.175, B:V.175, B:Y.177, B:I.179
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.12: 16 residues within 4Å:- Chain A: N.199, P.200
- Chain B: G.143, K.144, H.145, W.148, S.152, W.155, R.267, I.270, W.271, L.278, I.282
- Chain C: I.22, G.26, Y.30
17 PLIP interactions:15 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:W.148, B:W.148, B:W.155, B:W.155, B:I.270, B:W.271, B:L.278, B:I.282, C:Y.30, C:Y.30
- Hydrogen bonds: B:K.144
- Salt bridges: B:K.144, B:H.145, B:H.145, B:H.145, B:R.267, B:R.267
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pokkuluri, P.R. et al., Structural description of compensatory mutations that restore proton transfer pathways to the L212-L213A mutant bacterial reaction center. To be Published
- Release Date
- 2009-06-30
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
H - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 3dts.1
E(L212)A, D(L213)A, R(M233)L triple mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides
Reaction center protein L chain
Reaction center protein M chain
Reaction center protein H chain
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1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1pcr.1 | 1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1ry5.1 | 1rzh.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 more...less...1yf6.1 | 1yst.1 | 1z9j.1 | 1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gmr.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 2wx5.1 | 3dsy.1 | 3dta.1 | 3dtr.1 | 3du2.1 | 3du3.1 | 3duq.1 | 3i4d.1 | 3zum.1 | 3zuw.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4lwy.1 | 4rcr.1 | 4v9g.30 | 4v9g.62 | 5lri.1 | 5lse.1 | 7va9.3 | 7va9.35 | 7vb9.1 | 7vnm.1 | 7vny.1 | 7vor.3 | 7vor.36 | 7vot.3 | 7vot.36 | 7voy.1 | 8vtj.1