SMTL ID : 3n2d.1

Crystal Structure of the Complex of type I Ribosome inactivating protein with hexapeptide Ser-Asp-Asp-Asp-Met-Gly at 2.2 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x SER- ASP- ASP- ASP- MET- GLY: 6-meric peptide from 60S acidic ribosomal protein P2-beta(Non-covalent)

SER-ASP-ASP-ASP-MET-GLY.1: 14 residues within 4Å: Chain A: Y.166, Q.169, Q.170, E.173, R.174, E.179, V.180, P.181, S.182, D.217, S.218, N.231, S.235, N.236 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.166, A:Q.169, A:Q.170, A:E.173, A:R.174, A:E.179, A:E.179, A:S.182, A:S.218, A:S.218, A:S.218, A:N.231, A:N.236 Water bridges: A:S.183

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: T.226, N.227, T.229 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kushwaha, G.S. et al., Crystal Structure of the Complex of type I Ribosome inactivating protein with hexapeptide Ser-Asp-Asp-Asp-Met-Gly at 2.2 A resolution. To be Published

Release Date

2010-07-28

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

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