SMTL ID : 3n31.1

Crystal Structure of the complex of type I ribosome inactivating protein with fucose at 2.1A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.227, T.229, S.230 No protein-ligand interaction detected (PLIP)

1 x FCA: alpha-D-fucopyranose(Non-covalent)

FCA.2: 9 residues within 4Å: Chain A: V.69, Y.70, I.71, G.109, Y.111, I.155, A.159, E.160, R.163 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.111 Hydrogen bonds: A:V.69, A:I.71, A:I.71, A:G.109, A:R.163 Salt bridges: A:R.163

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.6, A.9, L.129, P.130, A.175, Y.176 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.6, A:A.9, A:A.9, A:A.175 Water bridges: A:G.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kushwaha, G.S. et al., Crystal Structure of the complex of type I ribosome inactivating protein with fucose at 2.1A resolution. To be Published

Release Date

2010-06-30

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

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