- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CD9: 5-[(6-chloro-2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acid(Non-covalent)
CD9.6: 9 residues within 4Å:- Chain A: V.48, V.50, G.53, V.121, I.122, S.124, M.125, E.128, H.154
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.48, A:V.50, A:V.121, A:M.125
- Salt bridges: A:H.154
CD9.17: 9 residues within 4Å:- Chain B: V.48, V.50, G.53, V.121, I.122, S.124, M.125, E.128, H.154
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:V.48, B:V.50, B:V.121, B:M.125
- Salt bridges: B:H.154
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x ACY: ACETIC ACID(Non-functional Binders)
ACY.9: 9 residues within 4Å:- Chain A: Y.54, N.155, H.156, G.168
- Chain B: A.76, G.77, R.78, W.79, P.80
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.54, A:N.155
- Hydrogen bonds: A:N.155
- Salt bridges: A:H.156
- Water bridges: B:V.81
ACY.10: 4 residues within 4Å:- Chain A: H.38, V.43, A.62, E.63
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.63
- Salt bridges: A:H.38
ACY.18: 6 residues within 4Å:- Chain A: Q.66, Y.70
- Chain B: H.142, K.144, T.145
- Ligands: SO4.14
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:H.142, B:K.144
- Hydrogen bonds: B:T.145, B:T.145, A:Q.66
- Salt bridges: B:K.144
ACY.19: 9 residues within 4Å:- Chain A: A.76, G.77, R.78, W.79, P.80
- Chain B: Y.54, N.155, H.156, G.168
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.54, B:N.155
- Water bridges: B:G.168, A:R.78
- Salt bridges: B:H.156
ACY.20: 4 residues within 4Å:- Chain B: H.38, V.43, A.62, E.63
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.62
- Hydrogen bonds: B:E.63
- Salt bridges: B:H.38
ACY.21: 4 residues within 4Å:- Chain B: Q.139, T.145, M.149
- Ligands: SO4.14
1 PLIP interactions:1 interactions with chain B- Water bridges: B:T.145
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rhodes, D.I. et al., Structural basis for a new mechanism of inhibition of HIV-1 integrase identified by fragment screening and structure-based design. ANTIVIR.CHEM.CHEMOTHER. (2011)
- Release Date
- 2011-04-27
- Peptides
- Integrase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 3nf9.1
Structural basis for a new mechanism of inhibition of HIV integrase identified by fragment screening and structure based design
Integrase
Toggle Identical (AB)Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 | 4ceo.1 more...less...4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1