SMTL ID : 3nno.1

Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with Alpha-Rhamnose at 2.9 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 10 residues within 4Å: Chain C: H.37, A.39, T.152, L.153, S.154 Chain D: H.37, A.39, T.152, L.153, S.154 9 PLIP interactions: 5 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:T.152, D:L.153, D:S.154, C:T.152, C:L.153, C:S.154 Water bridges: D:N.110 Salt bridges: D:H.37, C:H.37

1 x RAM: alpha-L-rhamnopyranose(Non-covalent)

RAM.2: 8 residues within 4Å: Chain C: W.66, G.95, N.99 Chain D: A.94, G.95, P.96, T.97, Q.150 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:T.97, D:T.97, D:Q.150, C:W.66, C:G.95, C:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dube, D. et al., Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with Alpha-Rhamnose at 2.9 A resolution. To be Published

Release Date

2010-07-21

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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