SMTL ID : 5e0b.2 (1 other biounit)

Crystal structure of the complex of Peptidoglycan recognition protein PGRP-S with N-Acetyl Muramic acid at 2.6 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 11 residues within 4Å: Chain A: H.37, A.39, T.152, L.153, S.154 Chain B: H.37, A.39, T.152, L.153, S.154 Ligands: GOL.3 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:L.153, B:S.154, A:T.152, A:L.153, A:S.154 Water bridges: B:P.151 Salt bridges: B:H.37, A:H.37

1 x AMU: N-acetyl-beta-muramic acid(Non-covalent)

AMU.2: 11 residues within 4Å: Chain A: W.66, C.67, R.85, K.90, G.91, A.92, G.95, P.96, N.99, P.100 Chain B: P.96 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.96, B:P.96 Hydrogen bonds: A:C.67, A:R.85, A:R.85, A:K.90, A:G.91, A:N.99 Salt bridges: A:K.90

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: P.151, T.152 Chain B: H.37, T.38, A.39, Y.71, H.146 Ligands: TLA.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:P.151, A:L.153, B:T.38, B:Y.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, P. et al., Crystal structure of the complex of Peptidoglycan recognition protein PGRP-S with N-Acetyl Muramic acid at 2.6 A resolution. To Be Published

Release Date

2015-10-14

Peptides

Peptidoglycan recognition protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Peptidoglycan recognition protein 1

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