SMTL ID : 3qs0.1

Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with a bound N-acetylglucosamine in the diffusion channel at 2.5 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 8 residues within 4Å: Chain B: D.2, P.3, P.4, C.6, A.133, L.134 Chain D: R.31, R.138 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain B Salt bridges: D:R.31 Hydrogen bonds: B:P.4, B:C.6, B:A.133 Water bridges: B:P.4

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 11 residues within 4Å: Chain C: H.37, A.39, T.152, L.153, S.154 Chain D: H.37, A.39, T.152, L.153, S.154 Ligands: GOL.3 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:T.152, D:L.153, C:L.153, C:S.154 Salt bridges: D:H.37, C:H.37

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain C: P.151, T.152 Chain D: H.37, T.38, A.39, Y.71, H.146 Ligands: TLA.2 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:T.38, D:Y.71, C:P.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dube, D. et al., Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with a bound N-acetylglucosamine in the diffusion channel AT 2.5 A resolution. To be Published

Release Date

2011-03-16

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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