SMTL ID : 7xu8.2 (1 other biounit)

Structure of the complex of camel peptidoglycan recognition protein-short (PGRP-S) with heptanoic acid at 2.15 A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.90, G.95, P.96, N.99, P.100 Chain B: P.96 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.90, A:N.99 Water bridges: A:A.94, A:G.95, A:N.99 EDO.2: 4 residues within 4Å: Chain A: P.96, T.97, Q.150 Chain B: W.66 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.150 Water bridges: A:A.94, A:T.97 EDO.6: 5 residues within 4Å: Chain A: P.151, T.152 Chain B: H.37, Y.71, H.146 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.38, B:Y.71, B:H.146 Water bridges: B:H.146, A:L.153

5 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)

PEO.3: 3 residues within 4Å: Chain A: T.27 Ligands: PEO.4, PEO.5 No protein-ligand interaction detected (PLIP) PEO.4: 5 residues within 4Å: Chain A: R.25, L.26, T.27 Ligands: PEO.3, PEO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.25, A:L.26 PEO.5: 5 residues within 4Å: Chain A: L.26, T.27, R.28 Ligands: PEO.3, PEO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.28, A:R.28 PEO.7: 4 residues within 4Å: Chain A: P.96 Chain B: G.95, P.96, N.99 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.90, B:N.99 PEO.8: 1 residues within 4Å: Chain B: N.63 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:N.63, A:A.171

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.9: 4 residues within 4Å: Chain A: W.66 Chain B: P.96, T.97, Q.150 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maurya, A. et al., Ligand recognition by peptidoglycan recognition protein-S (PGRP-S): structure of the complex of camel PGRP-S with heptanoic acid at 2.15 angstrom resolution. Int J Biochem Mol Biol (2022)

Release Date

2022-06-15

Peptides

Peptidoglycan recognition protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Peptidoglycan recognition protein 1

Related Entries With Identical Sequence