SMTL ID : 7xfx.1 (1 other biounit)

Crystal structure of the ternary complex of Peptidoglycan recognition protein, PGRP-S with hexanoic and tartaric acids at 2.28 A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 4 residues within 4Å: Chain A: W.66, C.67, R.85, A.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.66, A:C.67 Water bridges: A:R.85 Salt bridges: A:R.85

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: S.167, H.168, R.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.168, A:R.170 EDO.3: 4 residues within 4Å: Chain A: H.37, A.39, Y.71, S.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.71, A:S.154 Water bridges: A:S.154 EDO.4: 4 residues within 4Å: Chain B: S.36, H.37, Y.71, H.146 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.36, B:S.36

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain B: W.66, C.67, R.85 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maurya, A. et al., Crystal structure of the ternary complex of Peptidoglycan recognition protein, PGRP-S with hexanoic and tartaric acids at 2.28 A resolution. To Be Published

Release Date

2022-05-11

Peptides

Peptidoglycan recognition protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidoglycan recognition protein 1

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