SMTL ID : 3usx.1

Crystal structure of PGRP-S complexed with Myristic Acid at 2.28 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-tetramer

Ligands

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 8 residues within 4Å: Chain A: A.129, A.133 Chain B: P.3, A.5, C.6, L.134 Chain D: R.31, R.138 6 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: B:P.3, B:A.5, B:L.134, A:A.129 Hydrogen bonds: D:R.31 Salt bridges: D:R.138

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain C: P.151 Chain D: S.36, H.37, T.38, Y.71, H.93, H.146 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.36, D:H.37, D:T.38, D:Y.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, P. et al., Structural basis of the binding of fatty acids to peptidoglycan recognition protein, PGRP-S through second binding site. Arch.Biochem.Biophys. (2013)

Release Date

2012-01-11

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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