SMTL ID : 4orv.2 (1 other biounit)

Crystal structure of the ternary complex of camel peptidoglycan recognition protein PGRP-S with 7- phenylheptanoic acid and N- acetylglucosamine at 2.50 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 11 residues within 4Å: Chain A: H.37, A.39, T.152, L.153, S.154 Chain B: H.37, A.39, T.152, L.153, S.154 Ligands: GOL.3 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.152, A:L.153, A:S.154, B:T.152, B:L.153, B:S.154 Salt bridges: A:H.37, B:H.37

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 10 residues within 4Å: Chain A: W.66, K.90, G.91, A.92, G.95, P.96, N.99 Chain B: P.96, T.97, Q.150 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.66, A:G.91, A:G.95, A:N.99, B:Q.150 Water bridges: A:R.85, A:R.85

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: P.151, T.152 Chain B: S.36, H.37, T.38, A.39, Y.71, H.146 Ligands: TLA.1 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.36, B:T.38, B:Y.71, B:Y.71, B:T.152 Water bridges: A:T.152

1 x XXC: 7-phenylheptanoic acid(Non-covalent)

XXC.4: 11 residues within 4Å: Chain A: P.96, T.97, Q.150 Chain B: W.66, C.67, R.85, A.92, H.93, A.94, G.95, N.99 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.66, B:W.66 Salt bridges: B:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of the ternary complex of camel peptidoglycan recognition protein PGRP-S with 7- phenylheptanoic acid and N- acetylglucosamine at 2.50 A resolution. To be Published

Release Date

2014-03-05

Peptides

Peptidoglycan recognition protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Peptidoglycan recognition protein 1

Related Entries With Identical Sequence