SMTL ID : 3tru.1

Crystal structure of the complex of peptidoglycan recognition protein with cellular metabolite chorismate at 3.2 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-tetramer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 11 residues within 4Å: Chain C: H.37, A.39, T.152, L.153, S.154 Chain D: H.37, A.39, T.152, L.153, S.154 Ligands: GOL.2 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:L.153, C:S.154, D:L.153, D:S.154 Salt bridges: C:H.37, D:H.37

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain C: P.151, T.152 Chain D: H.37, T.38, Y.71, H.93, H.146 Ligands: TLA.1 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:T.38, D:Y.71, D:H.93, C:P.151

1 x ISJ: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid(Non-covalent)

ISJ.3: 9 residues within 4Å: Chain A: C.6, N.126, A.129 Chain B: D.2, A.5, C.6, A.133 Chain D: R.31, R.138 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: A:A.129 Hydrogen bonds: A:N.126, B:C.6 Salt bridges: D:R.31, D:R.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dube, D. et al., Crystal structure of the complex of peptidoglycan recognition protein with cellular metabolite chorismate at 3.2 A resolution. To be Published

Release Date

2011-09-28

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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