SMTL ID : 3sj6.1

Crystal Structure of the complex of type I ribosome inactivating protein from momordica balsamina with 5-(hydroxymethyl)oxalane-2,3,4-triol at 1.6 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.226, A:N.227, A:T.229 Water bridges: A:N.227, A:S.230, A:S.230, A:N.231, A:N.231

1 x RIP: beta-D-ribopyranose(Non-covalent)

RIP.2: 7 residues within 4Å: Chain A: Y.70, G.109, N.110, Y.111, I.155, E.160, R.163 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.111, A:R.163, A:R.163 Water bridges: A:G.109, A:N.110, A:E.112

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:A.9, A:A.9 GOL.4: 4 residues within 4Å: Chain A: N.33, T.234, I.237, Q.238 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.33, A:Q.238, A:Q.238 Water bridges: A:V.233, A:S.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kushwaha, G.S. et al., Crystal structures of a type-1 ribosome inactivating protein from Momordica balsamina in the bound and unbound states. Biochim.Biophys.Acta (2012)

Release Date

2011-08-03

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

Related Entries With Identical Sequence