SMTL ID : 3sym.1

Glycogen Phosphorylase b in complex with 3 -C-(hydroxymethyl)-beta-D-glucopyranonucleoside of 5-fluorouracil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x GP0: 5-fluoro-1-[3-C-(hydroxymethyl)-beta-D-glucopyranosyl]pyrimidine-2,4(1H,3H)-dione(Non-covalent)

GP0.1: 17 residues within 4Å: Chain A: G.134, G.135, L.136, L.139, D.283, N.284, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676, K.680 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.135, A:L.136, A:D.283, A:N.284, A:N.284, A:N.284, A:E.672, A:S.674, A:G.675, A:G.675 Water bridges: A:G.137, A:D.283, A:A.673, A:T.676, A:T.676 GP0.2: 17 residues within 4Å: Chain B: G.134, G.135, L.136, L.139, D.283, N.284, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676, K.680 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.135, B:L.136, B:D.283, B:N.284, B:N.284, B:N.284, B:H.377, B:Y.573, B:S.674, B:G.675, B:G.675 Water bridges: B:G.137, B:A.673, B:T.676, B:T.676

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manta, S. et al., 3'-Axial CH(2) OH Substitution on Glucopyranose does not Increase Glycogen Phosphorylase Inhibitory Potency. QM/MM-PBSA Calculations Suggest Why. Chem.Biol.Drug Des. (2012)

Release Date

2012-02-15

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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