SMTL ID : 3v2k.1

Crystal structure of ribosome inactivating protein from momordica balsamina complexed with the product of RNA substrate adenosine triphosphate at 2.0 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: T.226, N.227, T.229 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227, A:S.230

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.6, A.9, L.129, P.130, A.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8, A:A.9, A:A.9

1 x ADE: ADENINE(Non-covalent)

ADE.3: 10 residues within 4Å: Chain A: V.69, Y.70, I.71, G.109, N.110, Y.111, I.155, A.159, E.160, R.163 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.71, A:I.71, A:E.160, A:R.163, A:R.163 Water bridges: A:G.109, A:Y.111 pi-Stacking: A:Y.70, A:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kushwaha, G.S. et al., Crystal structures of a type-1 ribosome inactivating protein from Momordica balsamina in the bound and unbound states. Biochim.Biophys.Acta (2012)

Release Date

2012-01-18

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

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