SMTL ID : 4guw.1

Crystal structure of type 1 Ribosome inactivating protein from Momordica balsamina with lipopolysaccharide at 1.6 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 9 residues within 4Å: Chain A: N.33, I.34, V.232, V.233, T.234, S.235, N.236, I.237, Q.238 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.232, A:Q.238 Water bridges: A:K.165, A:K.165

1 x LP5: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE(Non-covalent)

LP5.3: 16 residues within 4Å: Chain A: V.69, Y.70, I.71, N.84, E.85, S.108, G.109, N.110, Y.111, E.112, I.155, A.159, E.160, R.163, E.189, N.190 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.110, A:E.112, A:N.190 Hydrogen bonds: A:I.71, A:G.109, A:G.109, A:E.160, A:R.163 Water bridges: A:W.192 Salt bridges: A:R.163, A:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A. et al., Crystal structure of type 1 Ribosome inactivating protein from Momordica balsamina with lipopolysaccharide at 1.6 Angstrom resolution. To be published

Release Date

2012-09-12

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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