SMTL ID : 4l66.1

Crystal structure of Ribosome inactivating protein from Momordica balsamina with highly ordered water structure in the substrate binding site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: T.226, N.227, T.229 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227, A:N.231

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.9, A:A.9 Water bridges: A:G.8, A:G.8 GOL.3: 7 residues within 4Å: Chain A: N.33, V.233, T.234, S.235, N.236, I.237, Q.238 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.33, A:S.235, A:Q.238 Water bridges: A:Q.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of Ribosome inactivating protein from Momordica balsamina with highly ordered water structure in the substrate binding site. To be Published

Release Date

2013-06-26

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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