SMTL ID : 4m5a.1

Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: T.226, N.227, T.229 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227, A:S.230, A:N.231

1 x DA2: NG,NG-DIMETHYL-L-ARGININE(Non-covalent)

DA2.2: 11 residues within 4Å: Chain A: V.69, Y.70, I.71, M.72, E.85, G.109, N.110, Y.111, I.155, E.160, R.163 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.70 Hydrogen bonds: A:I.71, A:E.85, A:G.109, A:R.163 Water bridges: A:N.110, A:Y.111, A:E.189 Salt bridges: A:E.160 pi-Cation interactions: A:Y.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution. To be Published

Release Date

2013-08-28

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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