SMTL ID : 4qnb.1

Disulfide stabilized HIV-1 CA hexamer in complex with PHENYL-L-PHENYLALANINAMIDE inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x 1B0: N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE(Non-covalent)

1B0.1: 20 residues within 4Å: Chain A: N.53, L.56, N.57, Q.63, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Chain F: Y.169, L.172, R.173, Q.176, S.178, Q.179, E.180 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain F Hydrophobic interactions: A:L.56, A:L.56, A:M.66, A:K.70, A:I.73, F:R.173, F:R.173, F:E.180 Hydrogen bonds: A:N.57, A:N.57, A:Q.63, A:K.70, F:E.180 pi-Cation interactions: A:K.70, A:K.70, A:K.70 1B0.2: 20 residues within 4Å: Chain B: N.53, L.56, N.57, Q.63, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Chain D: Y.169, L.172, R.173, Q.176, S.178, Q.179, E.180 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:L.56, B:L.56, B:M.66, B:K.70, B:I.73, D:R.173, D:R.173, D:E.180 Hydrogen bonds: B:N.57, B:N.57, B:Q.63, B:K.70, D:E.180 pi-Cation interactions: B:K.70, B:K.70, B:K.70 1B0.3: 20 residues within 4Å: Chain C: N.53, L.56, N.57, Q.63, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Chain E: Y.169, L.172, R.173, Q.176, S.178, Q.179, E.180 16 PLIP interactions: 12 interactions with chain C, 4 interactions with chain E Hydrophobic interactions: C:L.56, C:L.56, C:M.66, C:K.70, C:I.73, E:R.173, E:R.173, E:E.180 Hydrogen bonds: C:N.57, C:N.57, C:Q.63, C:K.70, E:E.180 pi-Cation interactions: C:K.70, C:K.70, C:K.70 1B0.4: 20 residues within 4Å: Chain C: Y.169, L.172, R.173, Q.176, S.178, Q.179, E.180 Chain D: N.53, L.56, N.57, Q.63, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 16 PLIP interactions: 4 interactions with chain C, 12 interactions with chain D Hydrophobic interactions: C:R.173, C:R.173, C:E.180, D:L.56, D:L.56, D:M.66, D:K.70, D:I.73 Hydrogen bonds: C:E.180, D:N.57, D:N.57, D:Q.63, D:K.70 pi-Cation interactions: D:K.70, D:K.70, D:K.70 1B0.5: 20 residues within 4Å: Chain A: Y.169, L.172, R.173, Q.176, S.178, Q.179, E.180 Chain E: N.53, L.56, N.57, Q.63, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 16 PLIP interactions: 12 interactions with chain E, 4 interactions with chain A Hydrophobic interactions: E:L.56, E:L.56, E:M.66, E:K.70, E:I.73, A:R.173, A:R.173, A:E.180 Hydrogen bonds: E:N.57, E:N.57, E:Q.63, E:K.70, A:E.180 pi-Cation interactions: E:K.70, E:K.70, E:K.70 1B0.6: 20 residues within 4Å: Chain B: Y.169, L.172, R.173, Q.176, S.178, Q.179, E.180 Chain F: N.53, L.56, N.57, Q.63, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 16 PLIP interactions: 12 interactions with chain F, 4 interactions with chain B Hydrophobic interactions: F:L.56, F:L.56, F:M.66, F:K.70, F:I.73, B:R.173, B:R.173, B:E.180 Hydrogen bonds: F:N.57, F:N.57, F:Q.63, F:K.70, B:E.180 pi-Cation interactions: F:K.70, F:K.70, F:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhattacharya, A. et al., Structural basis of HIV-1 capsid recognition by PF74 and CPSF6. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-12-31

Peptides

CAPSID PROTEIN P24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

CAPSID PROTEIN P24

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