SMTL ID : 4rzj.1

Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.1: 9 residues within 4Å: Chain A: V.69, Y.70, I.71, G.109, N.110, Y.111, I.155, A.159, R.163 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.70, A:I.155, A:A.159 Hydrogen bonds: A:I.71, A:I.71, A:Y.111 Water bridges: A:N.110, A:E.112 NAG.2: 3 residues within 4Å: Chain A: T.226, N.227, T.229 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.226, A:N.227

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175, Y.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:A.9 GOL.4: 8 residues within 4Å: Chain A: N.33, I.34, V.233, T.234, S.235, N.236, I.237, Q.238 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, S. et al., Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions. TO BE PUBLISHED

Release Date

2015-01-14

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

Related Entries With Identical Sequence