SMTL ID : 5fmj.1

Bcl-xL with mouse Bak BH3 Q75L complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-2-2-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: S.19, K.36, Q.37, R.40 Chain C: D.16, R.40 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.16, C:R.40 Water bridges: C:R.40 EDO.2: 2 residues within 4Å: Chain A: F.54, S.55 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.55 EDO.3: 8 residues within 4Å: Chain A: E.47, S.94, G.97, A.98, V.101 Chain C: K.21, Q.24, K.25 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:K.21, C:K.25, A:S.94 EDO.4: 9 residues within 4Å: Chain A: Y.50, S.55, D.56, L.57, T.58, L.61, F.95, A.98 Chain B: V.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.50, A:S.55, A:L.57, A:T.58, A:T.58 EDO.5: 6 residues within 4Å: Chain A: D.16, R.40 Chain C: S.19, K.36, Q.37, R.40 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.16, A:R.40 Water bridges: A:R.40 EDO.6: 2 residues within 4Å: Chain C: F.54, S.55 1 PLIP interactions: 1 interactions with chain C Water bridges: C:S.55 EDO.7: 8 residues within 4Å: Chain A: K.21, Q.24, K.25 Chain C: E.47, S.94, G.97, A.98, V.101 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:K.21, A:K.25, C:S.94 EDO.8: 9 residues within 4Å: Chain C: Y.50, S.55, D.56, L.57, T.58, L.61, F.95, A.98 Chain D: V.12 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.55, C:D.56, C:L.57, C:T.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, E.F. et al., Physiological Restraint of Bak by Bcl-Xl is Essential for Cell Survival. Genes Dev. (2016)

Release Date

2016-06-01

Peptides

BCL-2-LIKE PROTEIN 1: AC
BAK1 PROTEIN: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

BCL-2-LIKE PROTEIN 1

BAK1 PROTEIN

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