SMTL ID : 5y48.1

Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4-dione at 1.70 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x URA: URACIL(Non-covalent)

URA.1: 6 residues within 4Å: Chain A: Y.70, I.71, E.85, G.109, N.110, I.155 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.71, A:I.71 Water bridges: A:Y.70, A:G.109, A:N.110, A:Y.111, A:R.163, A:R.163 pi-Stacking: A:Y.70

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: T.226, N.227, T.229 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227, A:S.230, A:N.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, S.N. et al., Binding and structural studies of the complexes of type 1 ribosome inactivating protein from Momordica balsamina with uracil and uridine. Proteins (2019)

Release Date

2017-09-20

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

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