SMTL ID : 6oxy.1

HIV-1 Protease NL4-3 WT in Complex with LR2-19

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: P.1 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:F.99 Hydrogen bonds: A:P.1 SO4.2: 4 residues within 4Å: Chain A: R.87 Chain B: K.7, R.8, L.10 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.8 Water bridges: A:R.87 SO4.3: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 Water bridges: B:Q.18, B:Q.18, B:Q.18

1 x NG4: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-[({4-[(1S)-1,2-dihydroxyethyl]phenyl}sulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate(Non-covalent)

NG4.4: 31 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 21 PLIP interactions: 10 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:I.47, B:I.84, A:L.23, A:A.28, A:P.81, A:I.84 Hydrogen bonds: B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30, A:D.29, A:D.30, A:D.30 Water bridges: B:I.50, A:D.29, A:D.29, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rusere, L.N. et al., HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope. J.Med.Chem. (2019)

Release Date

2019-08-21

Peptides

Protease NL4-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease NL4-3

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