SMTL ID : 6pjf.1

HIV-1 Protease NL4-3 WT in Complex with LR2-44

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.19, K.20, E.21, N.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.21, A:N.83 Salt bridges: A:K.20 SO4.3: 4 residues within 4Å: Chain B: Q.18, K.20, M.36, N.37 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 Water bridges: B:Q.18, B:Q.18

1 x OP7: methyl [(1S)-1-cyclopentyl-2-({(2S,3S,5S)-5-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-1,6-diphenylhexan-2-yl}amino)-2-oxoethyl]carbamate(Non-covalent)

OP7.2: 31 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 18 PLIP interactions: 10 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:V.32, A:I.50, A:P.81, A:I.84, B:P.81, B:V.82 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.29, A:G.48, B:G.27, B:D.29, B:D.30 Water bridges: A:I.50, B:R.8, B:D.29, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rusere, L.N. et al., Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere. J.Med.Chem. (2020)

Release Date

2020-07-01

Peptides

Protease NL4-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease NL4-3

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