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SMTL ID : 8c3c.1

14-3-3 sigma with Pin1 binding site pS72 and bound Fusicoccin A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FSC: FUSICOCCIN(Non-covalent)

FSC.1:	14 residues within 4Å: Chain A: E.19, N.47, L.48, S.50, V.51, F.124, K.127, M.128, P.172, I.173, G.176, D.220, L.223 Chain B: W.13 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.48, A:V.51, A:F.124, A:K.127, A:I.173, A:L.223 Water bridges: A:K.127, A:K.127
FSC.3:	14 residues within 4Å: Chain C: E.19, N.47, L.48, S.50, V.51, F.124, K.127, M.128, P.172, I.173, G.176, D.220, L.223 Chain D: W.13 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:L.48, C:V.51, C:F.124, C:K.127, C:I.173, C:L.223 Water bridges: C:K.127, C:D.131

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	2 residues within 4Å: Chain A: E.40, E.115 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.7
MG.4:	2 residues within 4Å: Chain C: E.40, E.115 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.40, C:E.40, C:E.115, H₂O.15

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Verhoef, C.J.A. et al., Tracking the mechanism of covalent molecular glue stabilization using native mass spectrometry. Chem Sci (2023)

Release Date

2023-06-14

Peptides

14-3-3 protein sigma: AC
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

Toggle Identical (BD)

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