- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 13 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
3PE.3: 17 residues within 4Å:- Chain C: W.30, F.95, L.96, V.98, G.99, Y.103, Y.104, L.301, M.316, Q.322, Y.325, W.326, L.332, Y.358
- Chain F: R.44, V.48
- Ligands: CDL.4
12 PLIP interactions:11 interactions with chain C, 1 interactions with chain F- Hydrophobic interactions: C:W.30, C:W.30, C:F.95, C:L.96, C:V.98, C:L.301, C:W.326, C:W.326, C:L.332
- Hydrogen bonds: C:Y.104, C:Q.322
- Salt bridges: F:R.44
3PE.7: 8 residues within 4Å:- Chain 0: N.17, W.19
- Chain E: K.11, W.12, G.15, F.16, W.19
- Ligands: 3PE.8
5 PLIP interactions:3 interactions with chain E, 2 interactions with chain 0- Hydrophobic interactions: E:W.12, E:F.16, E:F.16
- Hydrogen bonds: 0:N.17, 0:W.19
3PE.8: 12 residues within 4Å:- Chain 0: R.20
- Chain C: P.319, I.320, I.323
- Chain E: W.19, Y.20, A.23
- Chain F: R.42, E.43, L.46, R.47
- Ligands: 3PE.7
4 PLIP interactions:1 interactions with chain C, 2 interactions with chain F, 1 interactions with chain 0- Hydrophobic interactions: C:I.323, F:L.46, 0:R.20
- Salt bridges: F:R.47
3PE.10: 7 residues within 4Å:- Chain H: S.439, F.442, L.444
- Chain J: H.221, I.226
- Ligands: PC1.9, CDL.11
6 PLIP interactions:3 interactions with chain H, 3 interactions with chain J- Hydrophobic interactions: H:L.444, J:I.226
- Hydrogen bonds: H:S.439, H:S.439
- Salt bridges: J:H.221, J:H.221
3PE.14: 15 residues within 4Å:- Chain J: W.30, F.95, V.98, G.99, Y.103, Y.104, L.301, M.316, Q.322, Y.325, W.326, L.332
- Chain M: R.44, V.48
- Ligands: CDL.15
12 PLIP interactions:10 interactions with chain J, 2 interactions with chain M- Hydrophobic interactions: J:W.30, J:W.30, J:W.30, J:V.98, J:Y.103, J:L.301, J:Y.325, M:V.48
- Hydrogen bonds: J:Y.104, J:Y.104, J:Q.322
- Salt bridges: M:R.44
3PE.16: 12 residues within 4Å:- Chain J: P.319, I.320, I.323, I.327, L.353, A.354
- Chain L: W.19
- Chain M: R.42, L.46, R.47, V.54, V.55
9 PLIP interactions:4 interactions with chain M, 5 interactions with chain J- Hydrophobic interactions: M:V.54, M:V.54, M:V.55, J:I.323, J:I.327, J:I.327, J:I.327, J:L.353
- Salt bridges: M:R.47
3PE.22: 12 residues within 4Å:- Chain Q: F.94, R.96, M.97, M.100, L.159
- Chain S: V.11, W.57, W.58, V.61, L.79, F.86
- Ligands: 3PE.27
5 PLIP interactions:2 interactions with chain S, 3 interactions with chain Q- Hydrophobic interactions: S:L.79, S:F.86, Q:L.159
- Hydrogen bonds: Q:M.97
- Salt bridges: Q:R.96
3PE.24: 11 residues within 4Å:- Chain Q: F.426, H.429, F.430, L.433
- Chain R: L.7, G.8, L.28, F.32
- Chain Y: Y.37, V.41, R.45
5 PLIP interactions:2 interactions with chain R, 2 interactions with chain Q, 1 interactions with chain Y- Hydrophobic interactions: R:F.32, Q:F.426, Q:F.426
- Hydrogen bonds: R:G.8
- Salt bridges: Y:R.45
3PE.26: 6 residues within 4Å:- Chain R: H.26, M.29, M.75
- Chain Y: A.35, K.38, F.39
3 PLIP interactions:1 interactions with chain R, 2 interactions with chain Y- Hydrogen bonds: R:H.26
- Salt bridges: Y:K.38, Y:K.38
3PE.27: 21 residues within 4Å:- Chain S: I.51, W.58, V.61, I.62, G.65, T.66, H.71, L.79, M.83, F.86, I.210, T.213, F.214, V.217, R.221, H.226, F.227, H.231, F.233, G.234
- Ligands: 3PE.22
21 PLIP interactions:21 interactions with chain S- Hydrophobic interactions: S:I.51, S:W.58, S:W.58, S:W.58, S:W.58, S:W.58, S:W.58, S:I.62, S:F.86, S:I.210, S:I.210, S:F.214, S:F.214, S:V.217, S:F.233
- Hydrogen bonds: S:H.226, S:F.233, S:G.234
- Salt bridges: S:R.221, S:R.221, S:H.231
3PE.28: 12 residues within 4Å:- Chain Q: W.334, L.339, L.342, A.415, F.418, V.419
- Chain T: N.72, R.73, T.75, E.77, W.78, V.81
9 PLIP interactions:6 interactions with chain Q, 3 interactions with chain T- Hydrophobic interactions: Q:L.339, Q:L.342, Q:A.415, Q:F.418, Q:V.419, T:W.78, T:V.81
- Salt bridges: Q:K.411
- Hydrogen bonds: T:R.73
3PE.30: 16 residues within 4Å:- Chain Q: L.215
- Chain S: Y.181, F.182, T.184, F.186, S.187, I.188, F.198, M.199, G.202, F.203
- Chain W: W.62, T.68, L.69, F.70, N.76
10 PLIP interactions:2 interactions with chain S, 7 interactions with chain W, 1 interactions with chain Q- Hydrophobic interactions: S:F.203, W:W.62, W:L.69, Q:L.215
- Hydrogen bonds: S:I.188, W:T.68, W:L.69, W:F.70, W:N.76, W:N.76
3PE.31: 10 residues within 4Å:- Chain 1: A.12, Q.15, I.19
- Chain Q: D.406, T.408, W.409
- Chain T: M.84, F.87
- Chain Z: F.9, H.10
4 PLIP interactions:1 interactions with chain T, 3 interactions with chain 1- Hydrophobic interactions: T:F.87, 1:A.12, 1:Q.15, 1:I.19
- 5 x CDL: CARDIOLIPIN(Non-covalent)
CDL.4: 11 residues within 4Å:- Chain C: S.28, S.29, W.30, F.33, Y.104
- Chain E: H.72
- Chain F: V.37, R.40, T.41, R.44
- Ligands: 3PE.3
11 PLIP interactions:7 interactions with chain C, 1 interactions with chain E, 3 interactions with chain F- Hydrophobic interactions: C:W.30, C:F.33
- Hydrogen bonds: C:S.28, C:S.28, C:S.29, C:S.29, C:Y.104
- Salt bridges: E:H.72, F:R.40, F:R.40, F:R.40
CDL.5: 14 residues within 4Å:- Chain C: S.29, N.32, F.33, I.92, K.227, L.230, I.234, I.238
- Chain D: Y.220, K.223, R.224
- Chain F: I.34, V.37, R.40
10 PLIP interactions:4 interactions with chain C, 5 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: C:F.33, C:I.92, C:I.234, D:Y.220, D:Y.220
- Salt bridges: C:K.227, D:K.223, F:R.40
- Hydrogen bonds: D:Y.220, D:R.224
CDL.11: 10 residues within 4Å:- Chain H: F.336, W.443, L.444, R.445
- Chain J: N.3, R.5, F.18, I.19, H.221
- Ligands: 3PE.10
10 PLIP interactions:5 interactions with chain H, 5 interactions with chain J- Hydrophobic interactions: H:R.445, J:F.18
- Hydrogen bonds: H:L.444, J:N.3, J:N.3
- Salt bridges: H:R.436, H:R.445, H:R.445, J:R.5, J:H.221
CDL.15: 10 residues within 4Å:- Chain J: S.29, W.30, F.33
- Chain L: H.72
- Chain M: V.37, R.40, T.41, R.44
- Ligands: 3PE.14, CDL.33
10 PLIP interactions:4 interactions with chain J, 5 interactions with chain M, 1 interactions with chain L- Hydrophobic interactions: J:W.30, J:F.33, M:V.37, M:T.41
- Hydrogen bonds: J:S.29, J:S.29, M:R.40
- Salt bridges: M:R.40, M:R.40, L:H.72
CDL.33: 17 residues within 4Å:- Chain 4: Y.220, K.223, R.224
- Chain J: S.29, F.33, K.227, L.230, I.234, I.238
- Chain L: H.72
- Chain M: Y.29, F.30, G.33, I.34, V.37, R.40
- Ligands: CDL.15
12 PLIP interactions:4 interactions with chain J, 6 interactions with chain 4, 2 interactions with chain M- Hydrophobic interactions: J:F.33, J:I.234, J:I.238, 4:Y.220
- Salt bridges: J:K.227, 4:K.223, 4:R.224, 4:R.224, 4:K.231, M:R.40
- Hydrogen bonds: 4:Y.220, M:R.40
- 2 x HEC: HEME C(Covalent)
HEC.6: 16 residues within 4Å:- Chain D: C.37, C.40, H.41, N.105, A.108, L.109, P.110, R.120, Y.126, L.130, F.153, I.158, G.159, M.160, P.163, L.190
9 PLIP interactions:9 interactions with chain D,- Hydrophobic interactions: D:A.108, D:L.130, D:M.160, D:P.163, D:L.190
- Hydrogen bonds: D:Y.126, D:G.159
- Salt bridges: D:R.120
- Metal complexes: D:H.41
HEC.34: 19 residues within 4Å:- Chain 4: V.36, C.37, S.39, C.40, H.41, N.105, A.108, L.109, P.110, P.111, I.116, R.120, Y.126, L.130, L.131, F.153, I.158, G.159, M.160
12 PLIP interactions:12 interactions with chain 4,- Hydrophobic interactions: 4:N.105, 4:A.108, 4:P.110, 4:I.116, 4:L.130, 4:L.131, 4:I.158
- Hydrogen bonds: 4:Y.126, 4:G.159, 4:M.160
- Salt bridges: 4:R.120
- Metal complexes: 4:H.41
- 2 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.9: 6 residues within 4Å:- Chain 4: M.222, K.226
- Chain H: D.417, F.442, L.444
- Ligands: 3PE.10
2 PLIP interactions:1 interactions with chain 4, 1 interactions with chain H- Salt bridges: 4:K.226, H:D.417
PC1.21: 10 residues within 4Å:- Chain Q: H.233, L.297, D.300, T.301, A.303, Y.304, S.307, I.311
- Chain R: L.81, Y.85
6 PLIP interactions:5 interactions with chain Q, 1 interactions with chain R- Hydrophobic interactions: Q:D.300, Q:A.303, Q:Y.304, Q:I.311, R:L.81
- Hydrogen bonds: Q:T.301
- 1 x CU: COPPER (II) ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x HEA: HEME-A(Non-covalent)
HEA.19: 32 residues within 4Å:- Chain Q: A.24, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, M.69, V.70, M.73, G.125, W.126, Y.371, F.377, H.378, L.381, S.382, V.386, M.390, F.393, T.424, F.425, Q.428, R.439, Y.440, V.465, M.468
- Ligands: TGL.32
34 PLIP interactions:34 interactions with chain Q,- Hydrophobic interactions: Q:A.24, Q:I.37, Q:R.38, Q:V.58, Q:V.58, Q:A.62, Q:M.65, Q:I.66, Q:V.70, Q:F.377, Q:F.377, Q:L.381, Q:V.386, Q:V.386, Q:F.393, Q:F.393, Q:T.424, Q:F.425, Q:V.465
- Hydrogen bonds: Q:R.38, Q:W.126, Q:Y.371, Q:Q.428, Q:R.439, Q:Y.440
- Salt bridges: Q:R.438, Q:R.439
- pi-Stacking: Q:H.61, Q:H.61, Q:H.378, Q:H.378, Q:F.425
- Metal complexes: Q:H.61, Q:H.378
HEA.20: 32 residues within 4Å:- Chain Q: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.316, G.317, V.320, F.348, G.352, L.353, G.355, I.356, L.358, S.359, D.364, L.367, H.368, D.369, V.373, H.376, F.377, V.380, L.381, R.438
- Chain R: I.34, P.69, I.72, L.73
- Ligands: CU.17
32 PLIP interactions:28 interactions with chain Q, 4 interactions with chain R,- Hydrophobic interactions: Q:W.126, Q:W.236, Q:V.243, Q:V.243, Q:Y.244, Q:I.247, Q:T.316, Q:F.348, Q:F.348, Q:L.353, Q:I.356, Q:V.373, Q:F.377, Q:F.377, Q:V.380, Q:L.381, Q:L.381, R:I.34, R:P.69, R:I.72, R:L.73
- Hydrogen bonds: Q:W.126, Q:Y.244, Q:L.367, Q:D.369
- Salt bridges: Q:H.368, Q:R.438
- pi-Stacking: Q:H.240, Q:H.376, Q:H.376
- pi-Cation interactions: Q:H.240
- Metal complexes: Q:H.376
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
TGL.32: 20 residues within 4Å:- Chain 0: P.12, F.13, R.20, M.24, M.25, Y.28, F.29
- Chain F: R.42
- Chain Q: T.17, L.18, L.20, L.21, F.22, W.25, F.109, L.110, F.393, F.400, I.472
- Ligands: HEA.19
20 PLIP interactions:14 interactions with chain Q, 6 interactions with chain 0- Hydrophobic interactions: Q:T.17, Q:L.20, Q:L.20, Q:F.22, Q:F.22, Q:W.25, Q:W.25, Q:F.109, Q:L.110, Q:L.110, Q:F.393, Q:F.400, Q:I.472, Q:I.472, 0:F.13, 0:F.13, 0:F.13, 0:Y.28, 0:Y.28, 0:F.29
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vercellino, I. et al., Structure and assembly of the mammalian mitochondrial supercomplex CIII 2 CIV. Nature (2021)
- Release Date
- 2021-10-13
- Peptides
- Cytochrome b-c1 complex subunit 1, mitochondrial: AH
Cytochrome b-c1 complex subunit 2, mitochondrial: BI
Cytochrome b: CJ
Cytochrome c1, heme protein, mitochondrial: D4
Cytochrome b-c1 complex subunit 7: EL
Cytochrome b-c1 complex subunit 8: FM
Cytochrome b-c1 complex subunit 6, mitochondrial: GN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: K
Cytochrome b-c1 complex subunit 9: O
Cox7a2l protein: P
Cytochrome c oxidase subunit 1: Q
Cytochrome c oxidase subunit 2: R
Cytochrome c oxidase subunit 3: S
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial: T
Cytochrome c oxidase subunit 5A, mitochondrial: U
Cytochrome c oxidase subunit 5B, mitochondrial: V
Cytochrome c oxidase subunit 6A2, mitochondrial: W
Cytochrome c oxidase subunit 6B1: X
Cytochrome c oxidase subunit 6C: Y
Cytochrome c oxidase subunit 7B, mitochondrial: Z
Cytochrome c oxidase subunit 7C, mitochondrial: 0
Cytochrome c oxidase subunit 8B, mitochondrial: 1
Cytochrome b-c1 complex subunit 9: 23 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AH
LB
BI
MC
CJ
ND
D4
OE
FL
QF
GM
RG
HN
SK
PO
TP
IQ
aR
bS
cT
dU
eV
fW
gX
hY
iZ
k0
l1
m2
J3
U - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7o3e.1
Murine supercomplex CIII2CIV in the intermediate locked conformation
Cytochrome b-c1 complex subunit 1, mitochondrial
Cytochrome b-c1 complex subunit 2, mitochondrial
Toggle Identical (BI)Cytochrome b
Cytochrome c1, heme protein, mitochondrial
Cytochrome b-c1 complex subunit 7
Toggle Identical (EL)Cytochrome b-c1 complex subunit 8
Cytochrome b-c1 complex subunit 6, mitochondrial
Cytochrome b-c1 complex subunit Rieske, mitochondrial
Cytochrome b-c1 complex subunit 9
Cox7a2l protein
Cytochrome c oxidase subunit 1
Cytochrome c oxidase subunit 2
Cytochrome c oxidase subunit 3
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Cytochrome c oxidase subunit 5A, mitochondrial
Cytochrome c oxidase subunit 5B, mitochondrial
Cytochrome c oxidase subunit 6A2, mitochondrial
Cytochrome c oxidase subunit 6B1
Cytochrome c oxidase subunit 6C
Cytochrome c oxidase subunit 7B, mitochondrial
Cytochrome c oxidase subunit 7C, mitochondrial
Cytochrome c oxidase subunit 8B, mitochondrial
Cytochrome b-c1 complex subunit 9
Toggle Identical (23)Related Entries With Identical Sequence
1occ.1 | 1oco.1 | 1ocr.1 | 1ocz.1 | 1v54.1 | 1v55.1 | 2dyr.1 | 2dys.1 | 2eij.1 | 2eik.1 | 2eil.1 | 2eim.1 | 2ein.1 | 2occ.1 | 2occ.2 | 2occ.3 | 2ybb.1 | 2zxw.1 | 2zxw.2 | 3abk.1 | 3abk.2 | 3abl.1 | 3abl.2 | 3abm.1 | 3abm.2 | 3ag1.1 | 3ag1.2 | 3ag2.1 | 3ag2.2 | 3ag3.1 more...less...3ag3.2 | 3ag4.1 | 3ag4.2 | 3asn.1 | 3asn.2 | 3aso.1 | 3aso.2 | 3wg7.1 | 3wg7.2 | 3x2q.1 | 3x2q.2 | 5b1a.1 | 5b1a.2 | 5gpn.50 | 5gup.76 | 5luf.1 | 5w97.1 | 5wau.1 | 5x19.1 | 5x19.2 | 5x1b.1 | 5x1b.2 | 5x1f.1 | 5x1f.2 | 5xdq.1 | 5xdq.2 | 5xdx.1 | 5xdx.2 | 5xth.50 | 5xti.50 | 5xti.130 | 5z84.1 | 5z84.2 | 5z85.1 | 5z85.2 | 5z86.1 | 5z86.2 | 5zco.1 | 5zco.2 | 5zcp.1 | 5zcp.2 | 5zcq.1 | 5zcq.2 | 6j8m.1 | 6j8m.2 | 6jy3.1 | 6jy4.1 | 6nkn.1 | 6nmf.1 | 6nmp.1 | 7coh.1 | 7coh.2 | 7ev7.1 | 7ev7.2 | 7o37.1 | 7o3c.1 | 7o3h.1 | 7thu.1 | 7tie.1 | 7tih.1 | 7tii.1 | 7xma.1 | 7xma.2 | 7xmb.1 | 7xmb.2 | 7y44.1 | 7y44.2 | 7ypy.1 | 7ypy.2 | 8gbt.1 | 8gcq.1 | 8gvm.1 | 8gvm.2 | 8h8r.1 | 8h8s.1 | 8iar.1 | 8ib7.1 | 8ibc.1 | 8ibg.1 | 8ic5.1 | 8ijn.1 | 8ijn.2 | 8pw5.6 | 8pw5.16 | 8pw5.26 | 8pw5.27 | 8pw5.28 | 8pw5.82 | 8pw5.83 | 8pw5.84 | 8pw6.3 | 8pw6.13 | 8pw6.22 | 8pw6.23 | 8pw6.24 | 8pw7.1 | 8pw7.2 | 8pw7.3 | 8pw7.15 | 8pw7.25