- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.1: 3 residues within 4Å:- Chain A: H.240, H.290, H.291
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.240, A:H.290, A:H.291
CU.28: 3 residues within 4Å:- Chain N: H.240, H.290, H.291
3 PLIP interactions:3 interactions with chain N- Metal complexes: N:H.240, N:H.290, N:H.291
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: H.368, D.369
- Chain B: S.197, E.198
6 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:H.368, A:D.369, B:E.198, H2O.250, H2O.251, H2O.252
MG.29: 4 residues within 4Å:- Chain N: H.368, D.369
- Chain O: S.197, E.198
6 PLIP interactions:2 interactions with chain N, 1 interactions with chain O, 3 Ligand-Water interactions- Metal complexes: N:H.368, N:D.369, O:E.198, H2O.1324, H2O.1325, H2O.1326
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.3: 3 residues within 4Å:- Chain A: E.40, G.45, S.441
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.441
- Water bridges: A:Q.43, A:D.442
NA.30: 3 residues within 4Å:- Chain N: E.40, G.45, S.441
4 PLIP interactions:4 interactions with chain N- Water bridges: N:A.39, N:E.40, N:Q.43, N:D.442
- 4 x HEA: HEME-A(Covalent)(Non-covalent)
HEA.4: 35 residues within 4Å:- Chain A: A.24, G.27, M.28, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, V.70, I.73, G.125, W.126, Y.371, V.374, F.377, H.378, L.381, S.382, V.386, M.390, F.393, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468
41 PLIP interactions:41 interactions with chain A,- Hydrophobic interactions: A:A.24, A:I.37, A:V.58, A:V.58, A:A.62, A:M.65, A:I.66, A:V.70, A:I.73, A:V.374, A:F.377, A:F.377, A:L.381, A:L.381, A:V.386, A:V.386, A:F.393, A:F.393, A:T.424, A:F.425, A:F.425, A:V.465
- Hydrogen bonds: A:R.38, A:Y.54, A:W.126, A:Y.371, A:S.382, A:Q.428, A:R.439, A:Y.440
- Water bridges: A:R.438, A:R.438, A:S.461
- Salt bridges: A:R.438, A:R.439
- pi-Stacking: A:H.61, A:F.377, A:H.378, A:F.425
- Metal complexes: A:H.61, A:H.378
HEA.5: 33 residues within 4Å:- Chain A: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, I.312, A.313, T.316, G.317, V.320, F.348, T.349, G.352, L.353, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438
- Chain B: I.34, P.69, I.72, L.73
39 PLIP interactions:34 interactions with chain A, 5 interactions with chain B,- Hydrophobic interactions: A:W.236, A:V.243, A:V.243, A:V.243, A:I.247, A:I.247, A:T.309, A:A.313, A:T.316, A:V.320, A:F.348, A:L.353, A:I.356, A:I.356, A:L.358, A:V.373, A:V.373, A:F.377, A:F.377, A:V.380, A:L.381, A:L.381, B:I.34, B:I.34, B:P.69, B:I.72, B:L.73
- Hydrogen bonds: A:W.126, A:Y.244
- Water bridges: A:T.316, A:D.369, A:D.369, A:R.438, A:R.438
- Salt bridges: A:H.368, A:R.438, A:R.439
- pi-Cation interactions: A:H.240
- Metal complexes: A:H.376
HEA.31: 35 residues within 4Å:- Chain N: A.24, G.27, M.28, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, M.69, V.70, G.125, W.126, Y.371, V.374, F.377, H.378, L.381, S.382, V.386, M.390, F.393, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468
36 PLIP interactions:36 interactions with chain N,- Hydrophobic interactions: N:A.24, N:I.37, N:R.38, N:A.62, N:M.65, N:I.66, N:V.70, N:V.374, N:F.377, N:L.381, N:L.381, N:V.386, N:V.386, N:F.393, N:F.393, N:T.424, N:V.465
- Hydrogen bonds: N:R.38, N:Y.54, N:W.126, N:Y.371, N:S.382, N:Q.428, N:R.439, N:Y.440
- Water bridges: N:R.438, N:R.438
- Salt bridges: N:R.438, N:R.439
- pi-Stacking: N:H.61, N:H.61, N:F.377, N:H.378, N:F.425
- Metal complexes: N:H.61, N:H.378
HEA.32: 30 residues within 4Å:- Chain N: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, A.313, T.316, G.317, F.348, T.349, G.352, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438
- Chain O: I.34, P.69, I.72, L.73
37 PLIP interactions:32 interactions with chain N, 5 interactions with chain O,- Hydrophobic interactions: N:W.236, N:V.243, N:V.243, N:V.243, N:I.247, N:I.247, N:T.309, N:A.313, N:T.316, N:F.348, N:I.356, N:I.356, N:V.373, N:V.373, N:F.377, N:F.377, N:V.380, N:L.381, N:L.381, N:L.381, O:I.34, O:I.34, O:P.69, O:I.72, O:L.73
- Hydrogen bonds: N:W.126, N:Y.244
- Water bridges: N:T.316, N:D.369, N:D.369, N:R.438, N:R.438
- Salt bridges: N:H.368, N:R.438, N:R.439
- pi-Cation interactions: N:H.240
- Metal complexes: N:H.376
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.6: 14 residues within 4Å:- Chain A: N.406, T.408, W.409, I.412
- Chain D: T.80, A.84, F.87
- Chain K: F.9, H.10
- Chain M: P.12, Q.15, A.16, L.19, S.20
17 PLIP interactions:5 interactions with chain M, 5 interactions with chain D, 5 interactions with chain A, 2 interactions with chain K- Hydrophobic interactions: M:P.12, M:A.16, M:L.19, D:T.80, D:A.84, D:F.87, D:F.87, D:F.87, A:T.408, A:W.409, A:W.409, A:I.412, K:F.9
- Water bridges: M:A.3, M:A.3
- Hydrogen bonds: A:T.408
- Salt bridges: K:H.10
PGV.7: 28 residues within 4Å:- Chain A: F.94, P.95, R.96, M.97, M.100, F.148, H.151, V.155
- Chain C: H.9, V.11, G.20, T.28, N.50, T.53, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, M.83, F.86, E.90, F.93
- Ligands: PEK.15, PGV.17
15 PLIP interactions:10 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:T.28, C:T.53, C:W.57, C:W.57, C:W.57, C:W.58, C:F.86, C:F.86, C:F.93, A:F.148, A:V.155
- Water bridges: C:M.83
- Hydrogen bonds: A:R.96, A:M.97
- Salt bridges: A:R.96
PGV.17: 24 residues within 4Å:- Chain C: M.54, W.58, V.61, I.62, S.65, T.66, H.71, F.86, E.90, H.207, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PGV.7, PEK.15, CDL.19
29 PLIP interactions:27 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:W.58, C:W.58, C:W.58, C:W.58, C:W.58, C:I.62, C:F.86, C:F.86, C:I.210, C:I.210, C:T.213, C:F.214, C:F.214, C:F.214, C:F.214, C:F.214
- Hydrogen bonds: C:S.65, C:R.221, C:F.233, C:G.234
- Water bridges: C:S.65, C:R.221, C:H.231, C:H.231, F:Q.12, F:E.17
- Salt bridges: C:R.221, C:R.221, C:H.231
PGV.18: 13 residues within 4Å:- Chain A: F.237
- Chain C: T.95, W.99, Y.102, H.103, L.106, A.107
- Chain H: N.22, N.24
- Chain P: W.258
- Chain T: A.1
- Ligands: CHD.14, CDL.51
11 PLIP interactions:5 interactions with chain H, 3 interactions with chain C, 1 interactions with chain A, 1 interactions with chain T, 1 interactions with chain P- Hydrogen bonds: H:N.22
- Water bridges: H:N.24, H:N.24, H:N.24, H:R.27
- Hydrophobic interactions: C:T.95, C:W.99, C:W.99, A:F.237, T:A.1, P:W.258
PGV.35: 29 residues within 4Å:- Chain N: F.94, P.95, R.96, M.97, M.100, F.148, H.151, V.155
- Chain P: H.9, V.11, G.20, A.24, T.28, N.50, T.53, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, M.83, S.89, E.90, F.93
- Ligands: PEK.42, PGV.44
14 PLIP interactions:8 interactions with chain P, 6 interactions with chain N- Hydrophobic interactions: P:A.24, P:T.28, P:T.53, P:W.57, P:W.57, P:W.58, P:F.93, N:F.148, N:V.155
- Water bridges: P:M.83, N:A.93
- Hydrogen bonds: N:R.96, N:M.97
- Salt bridges: N:R.96
PGV.44: 25 residues within 4Å:- Chain P: M.54, W.58, V.61, I.62, S.65, T.66, H.71, F.86, E.90, F.93, H.207, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PGV.35, PEK.42, CDL.46
31 PLIP interactions:29 interactions with chain P, 2 interactions with chain S- Hydrophobic interactions: P:W.58, P:W.58, P:W.58, P:W.58, P:W.58, P:W.58, P:I.62, P:F.86, P:F.86, P:F.93, P:I.210, P:I.210, P:T.213, P:F.214, P:F.214, P:F.214, P:F.214, P:F.214
- Hydrogen bonds: P:S.65, P:R.221, P:F.233, P:G.234
- Water bridges: P:S.65, P:R.221, P:H.231, P:H.231, S:Q.12, S:E.17
- Salt bridges: P:R.221, P:R.221, P:H.231
PGV.45: 12 residues within 4Å:- Chain C: W.258
- Chain G: A.1
- Chain N: F.237, D.298
- Chain P: W.99, Y.102, H.103, L.106, A.107
- Chain U: N.24
- Ligands: CDL.23, CHD.41
8 PLIP interactions:1 interactions with chain G, 3 interactions with chain U, 1 interactions with chain C, 2 interactions with chain P, 1 interactions with chain N- Hydrophobic interactions: G:A.1, C:W.258, P:W.99, P:W.99, N:F.237
- Water bridges: U:N.24, U:N.24, U:N.24
PGV.54: 14 residues within 4Å:- Chain N: N.406, T.408, W.409, I.412
- Chain Q: T.80, A.84, F.87
- Chain X: F.9, H.10
- Chain Z: P.12, Q.15, A.16, L.19, S.20
14 PLIP interactions:3 interactions with chain Z, 2 interactions with chain X, 5 interactions with chain N, 4 interactions with chain Q- Hydrophobic interactions: Z:P.12, Z:A.16, Z:L.19, X:F.9, N:T.408, N:W.409, N:W.409, N:I.412, Q:T.80, Q:F.87, Q:F.87, Q:F.87
- Salt bridges: X:H.10
- Hydrogen bonds: N:T.408
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
CUA.8: 6 residues within 4Å:- Chain B: H.161, C.196, E.198, C.200, H.204, M.207
7 PLIP interactions:7 interactions with chain B- Metal complexes: B:H.161, B:C.196, B:C.196, B:E.198, B:C.200, B:C.200, B:H.204
CUA.36: 6 residues within 4Å:- Chain O: H.161, C.196, E.198, C.200, H.204, M.207
7 PLIP interactions:7 interactions with chain O- Metal complexes: O:H.161, O:C.196, O:C.196, O:E.198, O:C.200, O:C.200, O:H.204
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
TGL.9: 18 residues within 4Å:- Chain A: F.346, V.350, Y.379, N.422, F.426, P.427, H.429, F.430, L.433
- Chain B: L.7, G.8, L.28, V.31, F.32, S.35, S.36, L.39
- Chain I: R.43
20 PLIP interactions:8 interactions with chain B, 10 interactions with chain A, 2 interactions with chain I- Hydrophobic interactions: B:L.28, B:V.31, B:F.32, B:F.32, B:L.39, A:F.346, A:V.350, A:N.422, A:F.426, A:F.426, A:F.426, A:P.427, A:H.429, A:F.430, A:F.430
- Water bridges: B:G.8, B:F.9, I:R.43
- Salt bridges: B:H.24, I:R.43
TGL.21: 21 residues within 4Å:- Chain A: W.334, M.339, L.342, G.343, K.411, F.414, A.415, F.418
- Chain B: L.39, I.42, S.43, L.46, T.47, K.49
- Chain D: R.73, S.74, E.77, W.78, V.81, I.89
- Chain I: R.16
15 PLIP interactions:9 interactions with chain A, 4 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: A:W.334, A:W.334, A:L.342, A:K.411, A:F.414, A:F.414, A:A.415, A:F.418, B:L.39, B:I.42, B:L.46, B:T.47, D:V.81, D:I.89
- Salt bridges: A:K.411
TGL.26: 28 residues within 4Å:
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 4 x HEA: HEME-A(Covalent)(Non-covalent)
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)