- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.3: 4 residues within 4Å:- Chain A: H.240, H.290, H.291
- Ligands: CMO.9
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: A:H.240, A:H.290, A:H.291, CMO.9
CU.32: 4 residues within 4Å:- Chain N: H.240, H.290, H.291
- Ligands: CMO.37
4 PLIP interactions:3 interactions with chain N, 1 Ligand-Ligand interactions- Metal complexes: N:H.240, N:H.290, N:H.291, CMO.37
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 3 residues within 4Å:- Chain A: H.368, D.369
- Chain B: E.198
6 PLIP interactions:1 interactions with chain B, 2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: B:E.198, A:H.368, A:D.369, H2O.9, H2O.9, H2O.11
MG.33: 4 residues within 4Å:- Chain N: H.368, D.369
- Chain O: D.173, E.198
5 PLIP interactions:2 interactions with chain N, 1 interactions with chain O, 2 Ligand-Water interactions- Metal complexes: N:H.368, N:D.369, O:E.198, H2O.39, H2O.39
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.5: 5 residues within 4Å:- Chain A: E.40, Q.43, G.45, S.441, D.442
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.45
- Water bridges: A:Q.43
NA.34: 5 residues within 4Å:- Chain N: E.40, Q.43, G.45, S.441, D.442
3 PLIP interactions:3 interactions with chain N- Hydrogen bonds: N:E.40, N:D.442, N:D.442
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.6: 13 residues within 4Å:- Chain A: N.406, T.408, W.409
- Chain D: T.80, A.84, F.87
- Chain K: F.9, H.10
- Chain M: P.12, Q.15, A.16, L.19, S.20
11 PLIP interactions:3 interactions with chain A, 1 interactions with chain K, 4 interactions with chain M, 3 interactions with chain D- Hydrophobic interactions: A:T.408, A:W.409, A:W.409, K:F.9, M:P.12, M:P.12, M:A.16, M:L.19, D:T.80, D:A.84, D:F.87
PGV.7: 24 residues within 4Å:- Chain A: F.94, P.95, R.96, M.97, M.100, L.152
- Chain C: H.9, V.11, A.24, L.31, N.50, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, F.86, S.89, E.90
- Ligands: PEK.14, PGV.15
14 PLIP interactions:5 interactions with chain A, 9 interactions with chain C- Hydrophobic interactions: A:L.152, C:A.24, C:L.31, C:W.57, C:W.57, C:W.58, C:F.86, C:E.90
- Hydrogen bonds: A:R.96, A:R.96, A:M.97, C:H.9, C:H.71
- Salt bridges: A:R.96
PGV.15: 21 residues within 4Å:- Chain C: M.54, W.58, V.61, S.65, T.66, H.71, M.83, H.207, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PGV.7, CDL.17
21 PLIP interactions:20 interactions with chain C, 1 interactions with chain F- Hydrophobic interactions: C:W.58, C:W.58, C:W.58, C:W.58, C:I.210, C:I.210, C:T.213, C:F.214, C:F.214
- Hydrogen bonds: C:S.65, C:T.66, C:R.221, C:F.233, C:G.234
- Water bridges: C:R.221, C:H.231, C:H.231, F:E.17
- Salt bridges: C:R.221, C:R.221, C:H.231
PGV.16: 12 residues within 4Å:- Chain A: D.298
- Chain C: T.95, W.99, Y.102, H.103, A.107
- Chain H: N.22
- Chain P: W.258
- Chain T: A.1, S.2
- Ligands: CHD.13, PEK.21
8 PLIP interactions:2 interactions with chain A, 3 interactions with chain H, 3 interactions with chain C- Water bridges: A:D.298, A:D.298, H:N.22
- Hydrogen bonds: H:N.22, H:N.24
- Hydrophobic interactions: C:T.95, C:W.99, C:W.99
PGV.26: 9 residues within 4Å:- Chain C: W.258, W.259
- Chain G: A.1
- Chain P: T.95, W.99, H.103, L.106
- Ligands: CDL.24, CHD.41
8 PLIP interactions:4 interactions with chain C, 1 interactions with chain N, 3 interactions with chain P- Hydrophobic interactions: C:W.258, C:W.258, C:W.258, C:W.259, P:W.99, P:W.99, P:W.99
- Hydrogen bonds: N:D.298
PGV.36: 11 residues within 4Å:- Chain N: N.406, T.408, W.409
- Chain Q: T.80, A.84, F.87
- Chain X: F.9, H.10
- Chain Z: A.3, K.4, Q.15
8 PLIP interactions:2 interactions with chain N, 2 interactions with chain Q, 2 interactions with chain Z, 2 interactions with chain X- Hydrophobic interactions: N:T.408, N:W.409, Q:A.84, Q:F.87, X:F.9
- Hydrogen bonds: Z:K.4
- Water bridges: Z:A.6
- Salt bridges: X:H.10
PGV.40: 22 residues within 4Å:- Chain N: F.94, P.95, R.96, M.97, M.100, V.155, I.158
- Chain P: H.9, T.28, N.50, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, F.86, F.93
- Ligands: PGV.43, PEK.49
15 PLIP interactions:9 interactions with chain P, 6 interactions with chain N- Hydrophobic interactions: P:T.28, P:W.57, P:W.57, P:W.58, P:F.86, P:F.93, N:V.155, N:I.158
- Hydrogen bonds: P:H.9, P:W.57, P:E.64, N:R.96, N:M.97
- Water bridges: N:A.93
- Salt bridges: N:R.96
PGV.43: 20 residues within 4Å:- Chain P: M.54, W.58, V.61, S.65, T.66, H.71, F.86, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PGV.40, CDL.44
26 PLIP interactions:24 interactions with chain P, 2 interactions with chain S- Hydrophobic interactions: P:W.58, P:W.58, P:W.58, P:W.58, P:F.86, P:F.86, P:I.210, P:T.213, P:F.214, P:F.214, P:F.214, P:F.214
- Hydrogen bonds: P:S.65, P:H.71, P:R.221, P:F.233, P:G.234
- Water bridges: P:S.65, P:R.221, P:H.231, P:H.231, S:Q.12, S:E.17
- Salt bridges: P:R.221, P:R.221, P:H.231
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
TGL.8: 14 residues within 4Å:- Chain A: V.350, N.422, F.426, F.430, L.433
- Chain B: L.7, G.8, H.24, L.28, V.31, F.32, S.35, L.39
- Chain I: R.43
10 PLIP interactions:5 interactions with chain B, 4 interactions with chain A, 1 interactions with chain I- Hydrophobic interactions: B:V.31, B:F.32, B:F.32, B:L.39, A:V.350, A:N.422, A:F.426, A:F.430
- Salt bridges: B:H.24, I:R.43
TGL.22: 14 residues within 4Å:- Chain A: I.332, W.334, M.339, K.411, F.414, A.415
- Chain B: L.46, T.47, T.48
- Chain D: R.73, E.77, W.78, V.81
- Chain I: R.16
6 PLIP interactions:2 interactions with chain D, 4 interactions with chain A- Hydrophobic interactions: D:V.81, A:W.334, A:W.334, A:F.414
- Water bridges: D:W.78
- Salt bridges: A:K.411
TGL.28: 18 residues within 4Å:- Chain A: F.2, L.7, T.17, L.21, F.22, W.25, F.393, F.400, I.472
- Chain L: N.10, I.11, P.12, F.13, R.20, M.25, F.28, F.29, S.31
11 PLIP interactions:6 interactions with chain A, 5 interactions with chain L- Hydrophobic interactions: A:L.21, A:F.22, A:F.22, A:W.25, A:F.393, A:I.472, L:I.11, L:F.13, L:F.28, L:F.28, L:F.29
TGL.35: 13 residues within 4Å:- Chain N: W.334, M.339, K.411
- Chain O: I.42, L.46
- Chain Q: N.72, R.73, T.75, E.77, W.78, V.81
- Chain V: R.16, H.20
9 PLIP interactions:4 interactions with chain N, 2 interactions with chain O, 3 interactions with chain Q- Hydrophobic interactions: N:W.334, N:W.334, N:K.411, O:I.42, O:L.46, Q:W.78, Q:V.81
- Salt bridges: N:K.411
- Hydrogen bonds: Q:W.78
TGL.51: 14 residues within 4Å:- Chain N: V.350, N.422, F.426, F.430, L.433
- Chain O: L.7, G.8, H.24, L.28, F.32, S.35, L.39
- Chain V: F.31, R.43
8 PLIP interactions:3 interactions with chain O, 3 interactions with chain N, 2 interactions with chain V- Hydrophobic interactions: O:L.28, O:F.32, N:V.350, N:F.426, N:F.430, V:F.31
- Salt bridges: O:H.24, V:R.43
TGL.53: 16 residues within 4Å:- Chain N: F.2, L.7, T.17, L.18, L.21, L.113, F.400, I.472
- Chain Y: I.11, P.12, F.13, S.14, M.24, M.25, F.28, F.29
14 PLIP interactions:6 interactions with chain N, 8 interactions with chain Y- Hydrophobic interactions: N:F.2, N:T.17, N:L.18, N:L.113, N:F.400, N:I.472, Y:I.11, Y:F.13, Y:F.13, Y:F.28, Y:F.28, Y:F.28, Y:F.29, Y:F.29
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
CUA.10: 6 residues within 4Å:- Chain B: H.161, C.196, E.198, C.200, H.204, M.207
7 PLIP interactions:7 interactions with chain B- Metal complexes: B:H.161, B:C.196, B:C.196, B:E.198, B:C.200, B:C.200, B:H.204
CUA.39: 6 residues within 4Å:- Chain O: H.161, C.196, E.198, C.200, H.204, M.207
7 PLIP interactions:7 interactions with chain O- Metal complexes: O:H.161, O:C.196, O:C.196, O:E.198, O:C.200, O:C.200, O:H.204
- 2 x PSC: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE(Non-covalent)
PSC.11: 15 residues within 4Å:- Chain A: F.321, A.325, H.328
- Chain B: H.52, M.56, D.57, E.60, W.65
- Chain E: D.8, F.11, L.41
- Chain I: L.17, R.18, I.21, F.25
10 PLIP interactions:4 interactions with chain I, 3 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: I:L.17, I:I.21, I:F.25, A:F.321, A:F.321, A:A.325, B:W.65, B:W.65
- Salt bridges: I:R.18
- Hydrogen bonds: B:D.57
PSC.47: 15 residues within 4Å:- Chain N: F.321, A.325, H.328
- Chain O: I.41, H.52, T.55, D.57, E.60, V.61, I.64
- Chain R: H.5, E.6, T.7, D.8
- Chain V: L.17
5 PLIP interactions:3 interactions with chain O, 1 interactions with chain N, 1 interactions with chain R- Hydrophobic interactions: O:I.41, O:V.61, O:I.64, N:F.321
- Salt bridges: R:D.8
- 8 x CHD: CHOLIC ACID(Non-covalent)
CHD.12: 12 residues within 4Å:- Chain A: M.271, G.272, W.275
- Chain B: Q.59, E.62, T.63, T.66
- Chain T: R.14, R.17, F.18, F.21, G.22
10 PLIP interactions:3 interactions with chain B, 4 interactions with chain A, 3 interactions with chain T- Hydrogen bonds: B:E.62, B:E.62, B:T.63
- Hydrophobic interactions: A:M.271, A:W.275, A:W.275, A:W.275, T:F.18
- Salt bridges: T:R.14, T:R.17
CHD.13: 10 residues within 4Å:- Chain A: H.233, W.288, D.300, T.301, Y.304
- Chain C: W.99, H.103
- Chain P: L.127
- Ligands: PGV.16, CDL.50
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:W.288, A:Y.304
- Hydrogen bonds: A:T.301, C:W.99
- Salt bridges: A:H.233, C:H.103
CHD.18: 6 residues within 4Å:- Chain C: R.156, K.157, L.160, F.164, L.223
- Chain J: F.1
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain J- Hydrophobic interactions: C:K.157, C:L.160, C:F.164, C:F.164, C:L.223
- Salt bridges: C:R.156
- Hydrogen bonds: J:F.1
CHD.27: 5 residues within 4Å:- Chain J: Y.32, R.33, M.36, T.37, L.40
3 PLIP interactions:3 interactions with chain J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 2 x PSC: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE(Non-covalent)
- 8 x CHD: CHOLIC ACID(Non-covalent)