- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.3: 4 residues within 4Å:- Chain A: H.240, H.290, H.291
- Ligands: CMO.10
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: A:H.240, A:H.290, A:H.291, CMO.10
CU.31: 4 residues within 4Å:- Chain N: H.240, H.290, H.291
- Ligands: CMO.36
4 PLIP interactions:3 interactions with chain N, 1 Ligand-Ligand interactions- Metal complexes: N:H.240, N:H.290, N:H.291, CMO.36
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: H.368, D.369
- Chain B: S.197, E.198
6 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:H.368, A:D.369, B:E.198, H2O.11, H2O.11, H2O.14
MG.32: 3 residues within 4Å:- Chain N: H.368, D.369
- Chain O: E.198
5 PLIP interactions:1 interactions with chain O, 2 interactions with chain N, 2 Ligand-Water interactions- Metal complexes: O:E.198, N:H.368, N:D.369, H2O.53, H2O.54
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.5: 5 residues within 4Å:- Chain A: E.40, Q.43, G.45, S.441, D.442
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.45
- Water bridges: A:Q.43, A:T.46
NA.33: 4 residues within 4Å:- Chain N: E.40, G.45, S.441, D.442
3 PLIP interactions:3 interactions with chain N- Hydrogen bonds: N:E.40, N:S.441, N:D.442
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.6: 15 residues within 4Å:- Chain A: N.406, T.408, W.409, I.412
- Chain D: A.84, F.87, F.91
- Chain K: D.8, F.9, H.10
- Chain M: P.12, Q.15, A.16, L.19, S.20
12 PLIP interactions:4 interactions with chain A, 3 interactions with chain M, 1 interactions with chain K, 4 interactions with chain D- Hydrophobic interactions: A:T.408, A:W.409, A:W.409, A:I.412, M:Q.15, M:A.16, M:L.19, K:F.9, D:A.84, D:F.87, D:F.87, D:F.91
PGV.7: 28 residues within 4Å:- Chain A: F.94, P.95, R.96, M.97, M.100, L.104, L.152, I.158, L.159
- Chain C: H.9, V.11, G.20, A.24, M.27, T.28, N.50, T.53, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, F.86, E.90
- Ligands: PEK.14
18 PLIP interactions:9 interactions with chain C, 9 interactions with chain A- Hydrophobic interactions: C:A.24, C:T.28, C:T.53, C:W.57, C:W.57, C:W.57, C:W.58, C:F.86, A:L.104, A:L.152, A:I.158, A:L.159
- Hydrogen bonds: C:H.9, A:R.96, A:R.96, A:M.97
- Water bridges: A:A.93
- Salt bridges: A:R.96
PGV.15: 22 residues within 4Å:- Chain C: M.54, W.58, V.61, I.62, S.65, T.66, H.71, F.86, H.207, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PEK.14, CDL.17
28 PLIP interactions:26 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:W.58, C:W.58, C:W.58, C:W.58, C:I.62, C:I.210, C:I.210, C:I.210, C:T.213, C:F.214, C:F.214, C:F.214, C:F.214
- Hydrogen bonds: C:S.65, C:T.66, C:H.71, C:R.221, C:F.233, C:G.234
- Water bridges: C:S.65, C:R.221, C:H.231, C:H.231, F:Q.12, F:E.17
- Salt bridges: C:R.221, C:R.221, C:H.231
PGV.16: 12 residues within 4Å:- Chain A: D.298
- Chain C: W.99, Y.102, H.103, L.106, A.107
- Chain H: N.22, N.24
- Chain P: W.258, W.259
- Chain T: A.1
- Ligands: CHD.13
7 PLIP interactions:3 interactions with chain H, 4 interactions with chain C- Hydrogen bonds: H:N.22, H:N.24
- Water bridges: H:N.22
- Hydrophobic interactions: C:W.99, C:W.99, C:L.106, C:L.106
PGV.34: 16 residues within 4Å:- Chain N: N.406, T.408, W.409
- Chain Q: T.80, A.84, F.91
- Chain X: F.9, H.10, S.20
- Chain Z: P.9, T.10, S.11, P.12, Q.15, L.19, S.20
7 PLIP interactions:2 interactions with chain Q, 1 interactions with chain N, 4 interactions with chain Z- Hydrophobic interactions: Q:A.84, Q:F.91, N:W.409, Z:P.12, Z:L.19
- Hydrogen bonds: Z:T.10
- Water bridges: Z:A.6
PGV.35: 26 residues within 4Å:- Chain N: F.94, P.95, R.96, M.97, M.100, F.148, H.151
- Chain P: H.9, G.20, A.24, T.28, N.50, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, M.83, F.86, S.89, E.90
- Ligands: PEK.43, PGV.45
13 PLIP interactions:8 interactions with chain P, 5 interactions with chain N- Hydrophobic interactions: P:A.24, P:T.28, P:W.57, P:W.57, P:W.57, P:W.58, N:F.148
- Hydrogen bonds: P:H.9, P:E.64, N:R.96, N:M.97
- Water bridges: N:A.93
- Salt bridges: N:R.96
PGV.41: 11 residues within 4Å:- Chain C: W.258, W.259
- Chain G: A.1
- Chain N: D.298
- Chain P: T.95, W.99, H.103, L.106, A.107
- Chain U: N.24
- Ligands: CHD.42
6 PLIP interactions:4 interactions with chain P, 1 interactions with chain N, 1 interactions with chain U- Hydrophobic interactions: P:W.99, P:W.99, P:L.106
- Hydrogen bonds: P:H.103, N:D.298
- Water bridges: U:N.24
PGV.45: 25 residues within 4Å:- Chain P: M.54, W.58, V.61, S.65, T.66, H.71, L.79, M.83, F.86, E.90, L.206, H.207, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PGV.35, CDL.46
29 PLIP interactions:27 interactions with chain P, 2 interactions with chain S- Hydrophobic interactions: P:W.58, P:W.58, P:W.58, P:W.58, P:W.58, P:F.86, P:F.86, P:L.206, P:I.210, P:I.210, P:T.213, P:F.214, P:F.214, P:F.214, P:F.214
- Hydrogen bonds: P:S.65, P:H.71, P:R.221, P:F.233, P:G.234
- Water bridges: P:S.65, P:R.221, P:T.228, P:H.231, S:Q.12, S:E.17
- Salt bridges: P:R.221, P:R.221, P:H.231
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
TGL.8: 15 residues within 4Å:- Chain A: V.350, N.422, F.426, H.429, F.430, L.433
- Chain B: M.5, L.7, G.8, L.28, V.31, F.32, S.35, L.39
- Chain I: R.43
12 PLIP interactions:7 interactions with chain A, 4 interactions with chain B, 1 interactions with chain I- Hydrophobic interactions: A:V.350, A:N.422, A:F.426, A:H.429, A:F.430, A:F.430, A:L.433, B:L.7, B:V.31, B:F.32, B:L.39
- Salt bridges: I:R.43
TGL.9: 22 residues within 4Å:- Chain A: F.2, T.17, L.18, L.21, F.22, W.25, W.103, P.106, L.113, F.393, F.400, I.472
- Chain L: I.11, P.12, F.13, S.14, R.20, M.24, M.25, F.28, F.29, S.31
18 PLIP interactions:10 interactions with chain A, 8 interactions with chain L- Hydrophobic interactions: A:F.2, A:L.18, A:F.22, A:W.25, A:W.25, A:W.103, A:L.113, A:F.393, A:F.400, A:I.472, L:I.11, L:F.13, L:F.13, L:F.13, L:F.28, L:F.28, L:F.28, L:F.29
TGL.21: 20 residues within 4Å:- Chain A: W.334, M.339, L.342, K.411, F.414, A.415
- Chain B: L.39, I.42, L.46, T.47, T.48, K.49
- Chain D: R.73, E.77, W.78, V.81, M.86, I.89
- Chain I: R.16, H.20
13 PLIP interactions:3 interactions with chain B, 6 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: B:L.39, B:I.42, B:K.49, A:W.334, A:W.334, A:L.342, A:F.414, A:A.415, D:V.81, D:I.89
- Salt bridges: A:K.411
- Water bridges: D:T.75, D:E.77
TGL.38: 13 residues within 4Å:- Chain N: N.422, F.426, H.429, F.430, L.433
- Chain O: L.7, G.8, H.24, L.28, V.31, F.32, S.35
- Chain V: R.43
8 PLIP interactions:3 interactions with chain N, 4 interactions with chain O, 1 interactions with chain V- Hydrophobic interactions: N:H.429, N:F.430, N:L.433, O:L.28, O:V.31, O:F.32
- Water bridges: O:F.9
- Salt bridges: V:R.43
TGL.49: 18 residues within 4Å:- Chain N: W.334, M.339, L.342, G.343, F.414, A.415
- Chain O: L.39, I.42, S.43, T.47
- Chain Q: R.73, S.74, T.75, E.77, W.78, V.81, M.86
- Chain V: R.16
11 PLIP interactions:4 interactions with chain N, 5 interactions with chain Q, 2 interactions with chain O- Hydrophobic interactions: N:W.334, N:L.342, N:F.414, N:A.415, Q:E.77, Q:W.78, Q:V.81, O:L.39, O:I.42
- Hydrogen bonds: Q:E.77, Q:W.78
TGL.53: 22 residues within 4Å:- Chain N: F.2, L.7, T.17, L.18, L.20, L.21, F.22, W.25, L.113, F.393, F.400, I.472
- Chain Y: I.11, P.12, F.13, S.14, M.24, M.25, L.27, F.28, F.29, A.35
22 PLIP interactions:12 interactions with chain N, 10 interactions with chain Y- Hydrophobic interactions: N:F.2, N:T.17, N:L.18, N:L.20, N:W.25, N:W.25, N:W.25, N:W.25, N:L.113, N:F.393, N:F.400, N:I.472, Y:I.11, Y:F.13, Y:F.13, Y:L.27, Y:F.28, Y:F.28, Y:F.28, Y:F.29, Y:F.29, Y:A.35
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)