- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.1: 3 residues within 4Å:- Chain A: H.240, H.290, H.291
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.240, A:H.290, A:H.291
CU.27: 3 residues within 4Å:- Chain N: H.240, H.290, H.291
3 PLIP interactions:3 interactions with chain N- Metal complexes: N:H.240, N:H.290, N:H.291
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: H.368, D.369
- Chain B: S.197, E.198
6 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:H.368, A:D.369, B:E.198, H2O.233, H2O.234, H2O.235
MG.28: 4 residues within 4Å:- Chain N: H.368, D.369
- Chain O: S.197, E.198
6 PLIP interactions:1 interactions with chain O, 2 interactions with chain N, 3 Ligand-Water interactions- Metal complexes: O:E.198, N:H.368, N:D.369, H2O.1307, H2O.1308, H2O.1309
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.3: 5 residues within 4Å:- Chain A: E.40, Q.43, G.45, S.441, D.442
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.441
- Water bridges: A:Q.43
NA.29: 5 residues within 4Å:- Chain N: E.40, Q.43, G.45, S.441, D.442
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:Q.43
- Water bridges: N:Q.43
- 4 x HEA: HEME-A(Non-covalent)
HEA.4: 36 residues within 4Å:- Chain A: A.24, G.27, M.28, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, V.70, I.73, G.125, W.126, Y.371, V.374, F.377, H.378, L.381, S.382, V.386, I.389, M.390, F.393, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468
41 PLIP interactions:41 interactions with chain A,- Hydrophobic interactions: A:A.24, A:I.37, A:V.58, A:V.58, A:A.62, A:M.65, A:I.66, A:V.70, A:I.73, A:V.374, A:F.377, A:F.377, A:L.381, A:L.381, A:V.386, A:V.386, A:I.389, A:F.393, A:F.393, A:T.424, A:F.425, A:V.465
- Hydrogen bonds: A:R.38, A:Y.54, A:W.126, A:Y.371, A:S.382, A:Q.428, A:R.439, A:Y.440
- Water bridges: A:R.438, A:R.438, A:S.461
- Salt bridges: A:R.438, A:R.439
- pi-Stacking: A:H.61, A:F.377, A:H.378, A:F.425
- Metal complexes: A:H.61, A:H.378
HEA.5: 33 residues within 4Å:- Chain A: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, I.312, A.313, T.316, G.317, V.320, F.348, T.349, G.352, L.353, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438
- Chain B: I.34, P.69, I.72, L.73
38 PLIP interactions:33 interactions with chain A, 5 interactions with chain B,- Hydrophobic interactions: A:W.236, A:V.243, A:V.243, A:V.243, A:I.247, A:I.247, A:T.309, A:A.313, A:T.316, A:V.320, A:F.348, A:T.349, A:L.353, A:I.356, A:I.356, A:L.358, A:V.373, A:V.373, A:F.377, A:F.377, A:V.380, A:L.381, A:L.381, B:I.34, B:I.34, B:P.69, B:I.72, B:L.73
- Hydrogen bonds: A:W.126, A:Y.244
- Water bridges: A:T.316, A:D.369, A:D.369, A:R.439
- Salt bridges: A:H.368, A:R.438, A:R.439
- Metal complexes: A:H.376
HEA.30: 35 residues within 4Å:- Chain N: A.24, G.27, M.28, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, V.70, I.73, G.125, W.126, Y.371, V.374, F.377, H.378, L.381, S.382, V.386, M.390, F.393, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468
37 PLIP interactions:37 interactions with chain N,- Hydrophobic interactions: N:A.24, N:I.37, N:R.38, N:A.62, N:M.65, N:I.66, N:V.70, N:I.73, N:V.374, N:F.377, N:L.381, N:L.381, N:V.386, N:V.386, N:F.393, N:F.393, N:T.424, N:V.465
- Hydrogen bonds: N:R.38, N:Y.54, N:W.126, N:Y.371, N:S.382, N:Q.428, N:R.439, N:Y.440
- Water bridges: N:R.438, N:R.438
- Salt bridges: N:R.438, N:R.439
- pi-Stacking: N:H.61, N:H.61, N:F.377, N:H.378, N:F.425
- Metal complexes: N:H.61, N:H.378
HEA.31: 31 residues within 4Å:- Chain N: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, A.313, T.316, G.317, V.320, F.348, T.349, G.352, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438
- Chain O: I.34, P.69, I.72, L.73
39 PLIP interactions:34 interactions with chain N, 5 interactions with chain O,- Hydrophobic interactions: N:W.236, N:V.243, N:V.243, N:V.243, N:I.247, N:I.247, N:T.309, N:A.313, N:T.316, N:V.320, N:F.348, N:I.356, N:I.356, N:L.358, N:L.358, N:V.373, N:V.373, N:F.377, N:F.377, N:V.380, N:V.380, N:L.381, N:L.381, O:I.34, O:I.34, O:P.69, O:I.72, O:L.73
- Hydrogen bonds: N:W.126, N:Y.244
- Water bridges: N:T.316, N:D.369, N:D.369, N:R.438, N:R.438
- Salt bridges: N:H.368, N:R.438, N:R.439
- Metal complexes: N:H.376
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
TGL.6: 18 residues within 4Å:- Chain A: F.346, V.350, Y.379, N.422, F.426, P.427, H.429, F.430, L.433
- Chain B: L.7, G.8, H.24, L.28, V.31, F.32, S.35, L.39
- Chain I: R.43
19 PLIP interactions:11 interactions with chain A, 7 interactions with chain B, 1 interactions with chain I- Hydrophobic interactions: A:F.346, A:V.350, A:Y.379, A:N.422, A:F.426, A:F.426, A:F.426, A:P.427, A:H.429, A:F.430, A:F.430, B:L.7, B:V.31, B:F.32, B:F.32, B:L.39
- Water bridges: B:G.8
- Salt bridges: B:H.24, I:R.43
TGL.19: 21 residues within 4Å:- Chain A: W.334, M.339, L.342, G.343, K.411, F.414, A.415
- Chain B: L.39, I.42, S.43, T.47, T.48, K.49
- Chain D: R.73, S.74, E.77, W.78, V.81, M.86, I.89
- Chain I: H.20
12 PLIP interactions:3 interactions with chain B, 3 interactions with chain D, 6 interactions with chain A- Hydrophobic interactions: B:L.39, B:T.47, B:K.49, D:V.81, D:I.89, A:W.334, A:L.342, A:K.411, A:F.414, A:F.414
- Hydrogen bonds: D:E.77
- Salt bridges: A:K.411
TGL.25: 26 residues within 4Å:- Chain A: F.2, T.17, L.18, L.20, L.21, F.22, W.25, W.81, L.110, L.113, F.393, F.397, F.400, S.401, I.472
- Chain L: N.10, I.11, P.12, F.13, S.14, R.20, M.24, M.25, F.28, F.29, S.31
21 PLIP interactions:13 interactions with chain A, 8 interactions with chain L- Hydrophobic interactions: A:T.17, A:L.18, A:L.20, A:W.25, A:W.25, A:W.81, A:L.110, A:L.113, A:F.393, A:F.397, A:F.400, A:I.472, A:I.472, L:I.11, L:F.13, L:F.13, L:F.13, L:M.24, L:F.28, L:F.28, L:F.29
TGL.32: 19 residues within 4Å:- Chain N: F.346, V.350, Y.379, N.422, F.426, P.427, H.429, F.430, L.433, W.450
- Chain O: L.7, G.8, H.24, L.28, V.31, F.32, S.35, L.39
- Chain V: R.43
19 PLIP interactions:12 interactions with chain N, 5 interactions with chain O, 2 interactions with chain V- Hydrophobic interactions: N:F.346, N:V.350, N:N.422, N:F.426, N:F.426, N:F.426, N:F.426, N:P.427, N:H.429, N:F.430, N:F.430, N:W.450, O:V.31, O:F.32, O:F.32, O:L.39
- Salt bridges: O:H.24, V:R.43
- Water bridges: V:R.43
TGL.33: 25 residues within 4Å:- Chain N: F.2, T.17, L.18, L.20, L.21, F.22, W.25, W.81, L.110, L.113, F.393, F.400, I.472
- Chain Y: N.10, I.11, P.12, F.13, S.14, R.20, M.24, M.25, L.27, F.28, F.29, S.31
24 PLIP interactions:13 interactions with chain N, 11 interactions with chain Y- Hydrophobic interactions: N:T.17, N:L.18, N:L.20, N:L.21, N:W.25, N:W.25, N:W.81, N:L.110, N:L.113, N:F.393, N:F.400, N:I.472, N:I.472, Y:I.11, Y:F.13, Y:F.13, Y:F.13, Y:M.24, Y:L.27, Y:F.28, Y:F.28, Y:F.28, Y:F.29, Y:F.29
TGL.47: 22 residues within 4Å:- Chain N: W.334, M.339, L.342, G.343, F.414, A.415, F.418
- Chain O: L.39, I.42, S.43, L.46, T.47, K.49
- Chain Q: R.73, S.74, T.75, E.77, W.78, V.81, M.86, I.89
- Chain V: H.20
12 PLIP interactions:7 interactions with chain N, 2 interactions with chain O, 3 interactions with chain Q- Hydrophobic interactions: N:W.334, N:W.334, N:L.342, N:F.414, N:F.414, N:F.418, O:L.39, O:L.46, Q:V.81
- Salt bridges: N:K.411
- Hydrogen bonds: Q:E.77
- Water bridges: Q:E.77
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.7: 26 residues within 4Å:- Chain A: F.94, P.95, R.96, M.97, M.100
- Chain C: H.9, V.11, G.20, A.24, T.28, N.50, T.53, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, M.83, F.86, S.89, E.90, F.93
- Ligands: PGV.16
13 PLIP interactions:3 interactions with chain A, 10 interactions with chain C- Hydrogen bonds: A:R.96, A:M.97
- Salt bridges: A:R.96
- Hydrophobic interactions: C:A.24, C:T.28, C:T.53, C:W.57, C:W.57, C:W.58, C:F.86, C:F.86, C:F.93
- Water bridges: C:M.83
PGV.8: 13 residues within 4Å:- Chain A: N.406, T.408, W.409
- Chain D: T.80, A.84, F.87
- Chain K: F.9, H.10
- Chain M: P.12, Q.15, A.16, L.19, S.20
12 PLIP interactions:3 interactions with chain D, 4 interactions with chain K, 3 interactions with chain M, 2 interactions with chain A- Hydrophobic interactions: D:T.80, D:A.84, D:F.87, K:F.9, K:F.9, K:F.9, M:P.12, M:A.16, M:L.19, A:W.409, A:W.409
- Water bridges: K:F.9
PGV.16: 25 residues within 4Å:- Chain C: M.54, W.58, V.61, I.62, S.65, T.66, H.71, L.79, F.86, H.207, I.209, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PGV.7, CDL.13, PEK.14
28 PLIP interactions:26 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:W.58, C:W.58, C:W.58, C:W.58, C:W.58, C:W.58, C:I.62, C:F.86, C:I.209, C:I.210, C:T.213, C:F.214, C:F.214, C:F.214, C:F.214
- Hydrogen bonds: C:S.65, C:R.221, C:F.233, C:G.234
- Water bridges: C:S.65, C:R.221, C:H.231, C:H.231, F:Q.12, F:E.17
- Salt bridges: C:R.221, C:R.221, C:H.231
PGV.17: 11 residues within 4Å:- Chain A: F.237, D.298
- Chain C: V.91, T.95, W.99, Y.102, H.103, A.107
- Chain T: A.1
- Ligands: CHD.11, CDL.50
10 PLIP interactions:4 interactions with chain C, 3 interactions with chain H, 2 interactions with chain A, 1 interactions with chain T- Hydrophobic interactions: C:V.91, C:T.95, C:W.99, C:W.99, A:F.237, T:A.1
- Water bridges: H:N.24, H:N.24, H:N.24
- Hydrogen bonds: A:D.298
PGV.34: 28 residues within 4Å:- Chain N: F.94, P.95, R.96, M.97, M.100, V.155
- Chain P: H.9, V.11, G.20, A.24, T.28, N.50, T.53, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, M.83, F.86, S.89, E.90, F.93
- Ligands: PEK.42, PGV.44
14 PLIP interactions:9 interactions with chain P, 5 interactions with chain N- Hydrophobic interactions: P:A.24, P:T.28, P:T.53, P:W.57, P:W.57, P:F.86, P:F.86, P:F.93
- Water bridges: P:M.83, N:A.93
- Hydrogen bonds: N:R.96, N:R.96, N:M.97
- Salt bridges: N:R.96
PGV.35: 14 residues within 4Å:- Chain N: N.406, T.408, W.409
- Chain Q: T.80, A.84, F.87
- Chain X: F.9, H.10, V.17
- Chain Z: P.12, Q.15, A.16, L.19, S.20
12 PLIP interactions:3 interactions with chain N, 4 interactions with chain Z, 2 interactions with chain X, 3 interactions with chain Q- Hydrophobic interactions: N:W.409, N:W.409, N:W.409, Z:P.12, Z:A.16, Z:L.19, X:F.9, X:V.17, Q:T.80, Q:A.84, Q:F.87
- Water bridges: Z:A.6
PGV.44: 26 residues within 4Å:- Chain P: M.54, W.58, V.61, I.62, S.65, T.66, H.71, F.86, E.90, F.93, H.207, I.209, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233,
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 4 x HEA: HEME-A(Non-covalent)
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)