SMTL ID : 7tih.1

Structure of oxidized bovine cytochrome c oxidase with reduced metal centers induced by synchrotron X-ray exposure

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.35 Å
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x CU: COPPER (II) ION(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
4 x HEA: HEME-A(Non-covalent)
84 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
2 x OH: HYDROXIDE ION(Non-covalent)
2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
2 x PSC: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE(Non-covalent)
10 x CHD: CHOLIC ACID(Non-covalent)
4 x CDL: CARDIOLIPIN(Non-covalent)
6 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
6 x PEK: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
2 x SAC: N-ACETYL-SERINE(Non-covalent)(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ishigami, I. et al., Temperature-dependent structural transition following X-ray-induced metal center reduction in oxidized cytochrome c oxidase. J.Biol.Chem. (2022)
Release Date
2022-03-30
Peptides
Cytochrome c oxidase subunit 1: AN
Cytochrome c oxidase subunit 2: BO
Cytochrome c oxidase subunit 3: CP
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial: DQ
Cytochrome c oxidase subunit 5A, mitochondrial: ER
Cytochrome c oxidase subunit 5B, mitochondrial: FS
Cytochrome c oxidase subunit 6A2, mitochondrial: GT
Cytochrome c oxidase subunit 6B1: HU
Cytochrome c oxidase subunit 6C: IV
Cytochrome c oxidase subunit 7A1, mitochondrial: JW
Cytochrome c oxidase subunit 7B, mitochondrial: KX
Cytochrome c oxidase subunit 7C, mitochondrial: LY
Cytochrome c oxidase subunit 8B, mitochondrial: MZ
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
N
N
B
B
O
O
C
C
P
P
D
D
Q
Q
E
E
R
R
F
F
S
S
G
G
T
T
H
H
U
U
I
I
V
V
J
J
W
W
K
K
X
X
L
L
Y
Y
M
M
Z
Z
Membrane
We predict this structure to be a membrane protein.

Cytochrome c oxidase subunit 1

Toggle Identical (AN)

Cytochrome c oxidase subunit 2

Toggle Identical (BO)

Cytochrome c oxidase subunit 3

Toggle Identical (CP)

Cytochrome c oxidase subunit 4 isoform 1, mitochondrial

Toggle Identical (DQ)

Cytochrome c oxidase subunit 5A, mitochondrial

Toggle Identical (ER)

Cytochrome c oxidase subunit 5B, mitochondrial

Toggle Identical (FS)

Cytochrome c oxidase subunit 6A2, mitochondrial

Toggle Identical (GT)

Cytochrome c oxidase subunit 6B1

Toggle Identical (HU)

Cytochrome c oxidase subunit 6C

Toggle Identical (IV)

Cytochrome c oxidase subunit 7A1, mitochondrial

Toggle Identical (JW)

Cytochrome c oxidase subunit 7B, mitochondrial

Toggle Identical (KX)

Cytochrome c oxidase subunit 7C, mitochondrial

Toggle Identical (LY)

Cytochrome c oxidase subunit 8B, mitochondrial

Toggle Identical (MZ)

Related Entries With Identical Sequence

1occ.1 | 1oco.1 | 1ocr.1 | 1ocz.1 | 1v54.1 | 1v55.1 | 2dyr.1 | 2dys.1 | 2eij.1 | 2eik.1 | 2eil.1 | 2eim.1 | 2ein.1 | 2occ.1 | 2occ.2 | 2occ.3 | 2y69.1 | 2y69.2 | 2ybb.1 | 2zxw.1 | 2zxw.2 | 3abk.1 | 3abk.2 | 3abl.1 | 3abl.2 | 3abm.1 | 3abm.2 | 3ag1.1 | 3ag1.2 | 3ag2.1  more...