- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.1: 4 residues within 4Å:- Chain A: H.240, H.290, H.291
- Ligands: OH.19
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.240, A:H.290, A:H.291, H2O.1
CU.85: 4 residues within 4Å:- Chain N: H.240, H.290, H.291
- Ligands: OH.107
5 PLIP interactions:3 interactions with chain N, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: N:H.240, N:H.290, N:H.291, H2O.38, OH.107
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: H.368, D.369
- Chain B: S.197, E.198
6 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:H.368, A:D.369, B:E.198, H2O.7, H2O.10, H2O.11
MG.86: 4 residues within 4Å:- Chain N: H.368, D.369
- Chain O: S.197, E.198
6 PLIP interactions:1 interactions with chain O, 2 interactions with chain N, 3 Ligand-Water interactions- Metal complexes: O:E.198, N:H.368, N:D.369, H2O.45, H2O.46, H2O.48
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.3: 4 residues within 4Å:- Chain A: E.40, Q.43, G.45, S.441
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.40, A:G.45
- Water bridges: A:Q.43
NA.87: 3 residues within 4Å:- Chain N: E.40, G.45, S.441
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:E.40
- Water bridges: N:Q.43
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.4: 25 residues within 4Å:- Chain A: F.94, P.95, R.96, M.97, M.100, H.151, L.152, V.155
- Chain C: H.9, V.11, G.20, A.24, T.28, N.50, T.53, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, S.89
- Ligands: PEK.63
16 PLIP interactions:8 interactions with chain A, 8 interactions with chain C- Hydrophobic interactions: A:L.152, A:V.155, A:V.155, C:A.24, C:T.28, C:T.53, C:W.57, C:W.57, C:W.57, C:W.58
- Hydrogen bonds: A:R.96, A:R.96, A:M.97, C:E.64
- Water bridges: A:A.93
- Salt bridges: A:R.96
PGV.33: 24 residues within 4Å:- Chain C: M.51, M.54, W.58, V.61, I.62, S.65, T.66, H.71, M.83, F.86, H.207, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: CDL.35, DMU.62
28 PLIP interactions:26 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:W.58, C:W.58, C:W.58, C:W.58, C:W.58, C:W.58, C:I.62, C:F.86, C:F.86, C:I.210, C:T.213, C:F.214, C:F.214, C:F.214, C:F.214
- Hydrogen bonds: C:S.65, C:R.221, C:F.233, C:G.234
- Water bridges: C:S.65, C:R.221, C:H.231, C:H.231, F:Q.12, F:E.17
- Salt bridges: C:R.221, C:R.221, C:H.231
PGV.34: 11 residues within 4Å:- Chain C: T.95, W.99, Y.102, H.103, L.106, A.107
- Chain H: N.22, N.24
- Chain P: W.258
- Chain T: A.1
- Ligands: CHD.31
11 PLIP interactions:5 interactions with chain H, 3 interactions with chain C, 1 interactions with chain T, 1 interactions with chain P, 1 interactions with chain B- Hydrogen bonds: H:N.22
- Water bridges: H:N.22, H:N.24, H:N.24, H:N.24, B:R.178
- Hydrophobic interactions: C:T.95, C:W.99, C:W.99, T:A.1, P:W.258
PGV.82: 17 residues within 4Å:- Chain A: N.406, T.408, W.409, I.412
- Chain D: T.80, A.84, F.87
- Chain K: F.9, H.10
- Chain M: I.1, T.2, A.3, P.9, T.10, P.12, Q.15, A.16
13 PLIP interactions:5 interactions with chain A, 4 interactions with chain M, 1 interactions with chain K, 3 interactions with chain D- Hydrophobic interactions: A:T.408, A:W.409, A:I.412, M:P.9, K:F.9, D:T.80, D:A.84, D:F.87
- Hydrogen bonds: A:N.406, M:A.3, M:A.3
- Water bridges: A:R.480, M:A.3
PGV.90: 23 residues within 4Å:- Chain N: F.94, P.95, R.96, M.97, M.100, I.158
- Chain P: H.9, G.20, A.24, M.27, T.28, N.50, T.53, M.54, W.57, W.58, V.61, E.64, H.71, L.79, G.82, S.89
- Ligands: PEK.114
12 PLIP interactions:6 interactions with chain N, 6 interactions with chain P- Hydrophobic interactions: N:I.158, P:A.24, P:T.53, P:W.57, P:W.57, P:W.57, P:W.58
- Hydrogen bonds: N:R.96, N:R.96, N:M.97
- Water bridges: N:A.93
- Salt bridges: N:R.96
PGV.106: 16 residues within 4Å:- Chain N: N.406, T.408, W.409, I.412, E.474, S.478, R.480
- Chain Q: T.80, A.84, F.87
- Chain X: F.9, H.10
- Chain Z: A.6, T.10, P.12, Q.15
14 PLIP interactions:2 interactions with chain Q, 7 interactions with chain N, 2 interactions with chain Z, 3 interactions with chain X- Hydrophobic interactions: Q:A.84, Q:F.87, N:T.408, N:W.409, N:I.412, Z:P.12, X:F.9, X:F.9, X:F.9
- Water bridges: N:T.404, N:T.404, N:D.407, Z:A.6
- Salt bridges: N:R.480
PGV.116: 22 residues within 4Å:- Chain P: M.54, W.58, V.61, S.65, T.66, H.71, L.79, M.83, F.86, I.210, T.213, F.214, R.221, H.226, F.227, T.228, H.231, H.232, F.233, G.234
- Ligands: PEK.114, CDL.118
28 PLIP interactions:26 interactions with chain P, 2 interactions with chain S- Hydrophobic interactions: P:W.58, P:W.58, P:W.58, P:W.58, P:W.58, P:W.58, P:F.86, P:I.210, P:I.210, P:T.213, P:F.214, P:F.214, P:F.214, P:F.214
- Hydrogen bonds: P:S.65, P:T.66, P:R.221, P:F.233, P:G.234
- Water bridges: P:S.65, P:R.221, P:H.231, P:H.231, S:Q.12, S:E.17
- Salt bridges: P:R.221, P:R.221, P:H.231
PGV.117: 13 residues within 4Å:- Chain G: A.1
- Chain N: F.237, W.288, D.298
- Chain P: V.91, T.95, W.99, Y.102, H.103, L.106, A.107
- Ligands: PEK.111, CHD.113
10 PLIP interactions:4 interactions with chain N, 4 interactions with chain P, 1 interactions with chain U, 1 interactions with chain O- Hydrophobic interactions: N:F.237, N:W.288, P:V.91, P:W.99, P:W.99
- Hydrogen bonds: N:D.298, N:D.298
- Salt bridges: P:H.103
- Water bridges: U:N.24, O:R.178
- 4 x HEA: HEME-A(Non-covalent)
HEA.5: 34 residues within 4Å:- Chain A: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, I.312, A.313, T.316, G.317, V.320, F.348, T.349, G.352, L.353, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438
- Chain B: I.34, P.69, I.72, L.73
- Ligands: OH.19
37 PLIP interactions:31 interactions with chain A, 5 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:W.236, A:V.243, A:V.243, A:V.243, A:I.247, A:I.247, A:T.309, A:V.320, A:F.348, A:T.349, A:I.356, A:I.356, A:L.358, A:V.373, A:F.377, A:F.377, A:V.380, A:L.381, A:L.381, B:I.34, B:I.34, B:P.69, B:I.72, B:L.73
- Hydrogen bonds: A:W.126, A:Y.244
- Water bridges: A:T.316, A:D.369, A:D.369, A:R.438, A:R.438
- Salt bridges: A:H.368, A:R.438, A:R.439
- pi-Cation interactions: A:H.240
- Metal complexes: A:H.376, OH.19
HEA.6: 35 residues within 4Å:- Chain A: G.27, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, M.69, V.70, I.73, G.125, W.126, Y.371, V.374, F.377, H.378, L.381, S.382, V.386, F.393, M.417, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468, I.472
29 PLIP interactions:29 interactions with chain A,- Hydrophobic interactions: A:I.37, A:V.58, A:V.58, A:A.62, A:M.65, A:I.66, A:V.70, A:I.73, A:V.374, A:F.377, A:L.381, A:F.393, A:T.424, A:I.472
- Hydrogen bonds: A:R.38, A:Y.54, A:W.126, A:Y.371, A:S.382, A:Q.428, A:R.439, A:Y.440
- Water bridges: A:R.438, A:S.461
- Salt bridges: A:R.438, A:R.439
- pi-Stacking: A:F.425
- Metal complexes: A:H.61, A:H.378
HEA.91: 35 residues within 4Å:- Chain N: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, I.312, A.313, T.316, G.317, V.320, F.321, F.348, T.349, G.352, L.353, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438
- Chain O: I.34, P.69, I.72, L.73
- Ligands: OH.107
40 PLIP interactions:34 interactions with chain N, 5 interactions with chain O, 1 Ligand-Ligand interactions- Hydrophobic interactions: N:W.236, N:V.243, N:V.243, N:V.243, N:I.247, N:I.247, N:T.309, N:A.313, N:T.316, N:V.320, N:F.321, N:F.348, N:L.353, N:I.356, N:I.356, N:L.358, N:V.373, N:F.377, N:F.377, N:V.380, N:L.381, N:L.381, N:L.381, O:I.34, O:I.34, O:P.69, O:I.72, O:L.73
- Hydrogen bonds: N:Y.244, N:Y.244, N:D.364
- Water bridges: N:D.369, N:D.369, N:R.438, N:R.438
- Salt bridges: N:H.368, N:R.438
- pi-Cation interactions: N:H.240
- Metal complexes: N:H.376, OH.107
HEA.92: 34 residues within 4Å:- Chain N: A.24, G.27, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, M.69, V.70, G.125, W.126, Y.371, F.377, H.378, L.381, S.382, V.386, I.389, F.393, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468
- Ligands: TGL.89
31 PLIP interactions:31 interactions with chain N,- Hydrophobic interactions: N:I.37, N:R.38, N:V.58, N:V.58, N:A.62, N:M.65, N:I.66, N:V.70, N:L.381, N:V.386, N:V.386, N:I.389, N:F.393, N:F.393, N:T.424
- Hydrogen bonds: N:R.38, N:Y.54, N:Y.54, N:W.126, N:S.382, N:Q.428, N:R.439, N:Y.440
- Water bridges: N:R.438, N:S.461
- Salt bridges: N:R.438, N:R.439
- pi-Stacking: N:F.377, N:F.425
- Metal complexes: N:H.61, N:H.378
- 91 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 7 residues within 4Å:- Chain A: L.483, T.484, V.485, T.488, W.494, G.497
- Chain D: Y.11
Ligand excluded by PLIPEDO.8: 7 residues within 4Å:- Chain A: Y.260, Y.261, V.394, H.395, P.398, W.494
- Chain M: I.1
Ligand excluded by PLIPEDO.9: 7 residues within 4Å:- Chain A: P.182, H.256, T.259, K.265, T.490, N.491
- Ligands: EDO.59
Ligand excluded by PLIPEDO.10: 5 residues within 4Å:- Chain A: W.334, S.335, P.336, D.407, K.411
Ligand excluded by PLIPEDO.11: 4 residues within 4Å:- Chain A: Q.52, A.137, H.138, A.139
Ligand excluded by PLIPEDO.12: 9 residues within 4Å:- Chain A: R.5, N.11, K.13, D.14, W.81, P.499, P.500, Y.502
- Chain L: N.10
Ligand excluded by PLIPEDO.14: 6 residues within 4Å:- Chain A: G.269, M.271, G.272
- Chain B: A.58, E.62
- Ligands: CHD.22
Ligand excluded by PLIPEDO.15: 5 residues within 4Å:- Chain A: K.265, T.489
- Chain F: I.70, P.83, S.84
Ligand excluded by PLIPEDO.16: 7 residues within 4Å:- Chain A: E.507
- Chain C: T.5
- Chain F: P.30, N.32, P.50, R.56, L.96
Ligand excluded by PLIPEDO.17: 8 residues within 4Å:- Chain A: K.265, E.266
- Chain B: T.55
- Chain F: N.66, T.68, I.70, S.84
- Ligands: EDO.61
Ligand excluded by PLIPEDO.18: 4 residues within 4Å:- Chain A: L.48, G.49
- Chain L: L.44
- Chain M: K.41
Ligand excluded by PLIPEDO.23: 7 residues within 4Å:- Chain A: Y.447
- Chain B: M.1, A.2, Q.10, L.136, P.166, Y.193
Ligand excluded by PLIPEDO.24: 3 residues within 4Å:- Chain A: P.131
- Chain B: D.158, V.159
Ligand excluded by PLIPEDO.25: 4 residues within 4Å:- Chain B: M.146, E.147, P.215, L.216
Ligand excluded by PLIPEDO.26: 4 residues within 4Å:- Chain B: F.23, H.26, P.79, R.82
Ligand excluded by PLIPEDO.27: 3 residues within 4Å:- Chain B: H.102, E.157, D.158
Ligand excluded by PLIPEDO.28: 5 residues within 4Å:- Chain B: S.94, L.95, Y.113, M.148
- Chain H: Q.12
Ligand excluded by PLIPEDO.29: 3 residues within 4Å:
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
- 4 x HEA: HEME-A(Non-covalent)
- 91 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)