SMTL ID : 2eik.1

Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x CU: COPPER (II) ION(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
6 x CD: CADMIUM ION(Non-covalent)
4 x HEA: HEME-A(Covalent)(Non-covalent)
6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
2 x PSC: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE(Non-covalent)
8 x CHD: CHOLIC ACID(Non-covalent)
4 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
6 x PEK: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(Non-covalent)
4 x CDL: CARDIOLIPIN(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Muramoto, K. et al., A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase. Proc.Natl.Acad.Sci.Usa (2007)
Release Date
2007-05-29
Peptides
Cytochrome c oxidase subunit 1: AN
Cytochrome c oxidase subunit 2: BO
Cytochrome c oxidase subunit 3: CP
Cytochrome c oxidase subunit 4 isoform 1: DQ
Cytochrome c oxidase polypeptide Va: ER
Cytochrome c oxidase polypeptide Vb: FS
Cytochrome c oxidase polypeptide VIa-heart: GT
Cytochrome c oxidase subunit VIb isoform 1: HU
Cytochrome c oxidase polypeptide VIc: IV
Cytochrome c oxidase polypeptide VIIa-heart: JW
Cytochrome c oxidase polypeptide VIIb: KX
Cytochrome c oxidase polypeptide VIIc: LY
Cytochrome c oxidase polypeptide VIII-heart: MZ
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
N
N
B
B
O
O
C
C
P
P
D
D
Q
Q
E
E
R
R
F
F
S
S
G
G
T
T
H
H
U
U
I
I
V
V
J
J
W
W
K
K
X
X
L
L
Y
Y
M
M
Z
Z
Membrane
We predict this structure to be a membrane protein.

Cytochrome c oxidase subunit 1

Toggle Identical (AN)

Cytochrome c oxidase subunit 2

Toggle Identical (BO)

Cytochrome c oxidase subunit 3

Toggle Identical (CP)

Cytochrome c oxidase subunit 4 isoform 1

Toggle Identical (DQ)

Cytochrome c oxidase polypeptide Va

Toggle Identical (ER)

Cytochrome c oxidase polypeptide Vb

Toggle Identical (FS)

Cytochrome c oxidase polypeptide VIa-heart

Toggle Identical (GT)

Cytochrome c oxidase subunit VIb isoform 1

Toggle Identical (HU)

Cytochrome c oxidase polypeptide VIc

Toggle Identical (IV)

Cytochrome c oxidase polypeptide VIIa-heart

Toggle Identical (JW)

Cytochrome c oxidase polypeptide VIIb

Toggle Identical (KX)

Cytochrome c oxidase polypeptide VIIc

Toggle Identical (LY)

Cytochrome c oxidase polypeptide VIII-heart

Toggle Identical (MZ)

Related Entries With Identical Sequence

1occ.1 | 1oco.1 | 1ocr.1 | 1ocz.1 | 1v54.1 | 1v55.1 | 2dyr.1 | 2dys.1 | 2eij.1 | 2eil.1 | 2eim.1 | 2ein.1 | 2occ.1 | 2occ.2 | 2occ.3 | 2y69.1 | 2y69.2 | 2ybb.1 | 2zxw.1 | 2zxw.2 | 3abk.1 | 3abk.2 | 3abl.1 | 3abl.2 | 3abm.1 | 3abm.2 | 3ag1.1 | 3ag1.2 | 3ag2.1 | 3ag2.2  more...