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SMTL ID : 9eo5.1 (1 other biounit)

X-ray structure of the adduct formed upon reaction of picoplatin with bovine pancreatic ribonuclease (structure C)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

2 x NH3: AMMONIA(Non-covalent)

NH3.1:	2 residues within 4Å: Chain A: D.53 Ligands: PT.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.53
NH3.2:	4 residues within 4Å: Chain A: Y.25, Q.28, M.29 Ligands: PT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.28 Water bridges: A:S.32

2 x PT: PLATINUM (II) ION(Non-covalent)

PT.3:	2 residues within 4Å: Chain A: D.53 Ligands: NH3.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.53, A:D.53, H₂O.4
PT.4:	2 residues within 4Å: Chain A: M.29 Ligands: NH3.2 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ferraro, G. et al., Picoplatin binding to proteins: X-ray structures and mass spectrometry data on the adducts with lysozyme and ribonuclease A. Dalton Trans (2024)

Release Date

2024-05-22

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Ribonuclease pancreatic

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1a2w.1 | 1afk.1 | 1afk.2 | 1afl.1 | 1afl.2 | 1afu.1 | 1afu.2 | 1aqp.1 | 1bel.1 | 1bzq.1 | 1bzq.2 | 1bzq.3 | 1bzq.4 | 1dfj.1 | 1eos.1 | 1eos.2 | 1eow.1 | 1f0v.1 | 1f0v.2 | 1f0v.3 | 1f0v.4 | 1fs3.1 | 1jn4.1 | 1jn4.2 | 1js0.1 | 1jvt.1 | 1jvt.2 | 1jvu.1 | 1jvu.2 | 1jvv.1 more...less...

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