SMTL ID : 7vb9.1

Rba sphaeroides PufY-KO RC-LH1 dimer type-2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-22-21-2-mer

Ligands

51 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 24 residues within 4Å: Chain A: F.98, A.125, A.128, Y.129, L.132, W.157, V.158, T.161, H.169, H.174, A.177, I.178, F.181, F.182, S.245, A.246, C.248, M.249 Chain B: Y.211 Ligands: BCL.2, BPH.3, BCL.5, BCL.8, PC1.13 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:F.98, A:F.98, A:A.125, A:T.161, A:A.177, A:I.178, A:I.178, A:I.178, A:F.181, A:F.181, A:F.182, B:Y.211 Hydrogen bonds: A:S.245 Metal complexes: A:H.174 BCL.2: 20 residues within 4Å: Chain A: Y.129, L.132, F.147, I.151, W.152, H.154, L.155, V.158 Chain B: F.198, G.204, I.207, A.208, Y.211, G.212 Ligands: BCL.1, BPH.3, BCL.8, U10.9, PC1.11, PC1.12 13 PLIP interactions: 7 interactions with chain A, 6 interactions with chain B, Hydrophobic interactions: A:Y.129, A:L.132, A:F.147, A:F.147, A:L.155, A:V.158, B:F.198, B:I.207, B:I.207, B:A.208, B:Y.211 Metal complexes: A:H.154 pi-Stacking: B:Y.211 BCL.5: 18 residues within 4Å: Chain A: H.169, M.175, I.178, S.179, T.183 Chain B: M.123, W.158, L.161, V.176, I.180, H.183, L.184, T.187 Ligands: BCL.1, U10.4, BPH.6, BCL.8, SPO.10 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: B:L.161, B:V.176, B:I.180, B:L.184, B:T.187 pi-Stacking: A:F.182 BCL.8: 26 residues within 4Å: Chain A: V.158, Y.163 Chain B: M.123, V.127, F.151, A.154, L.157, W.158, L.161, N.188, F.190, S.191, L.197, F.198, H.203, S.206, I.207, L.210, Y.211, V.277, G.281, I.285 Ligands: BCL.1, BCL.2, BCL.5, BPH.6 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:V.127, B:V.127, B:F.151, B:A.154, B:L.157, B:W.158, B:F.190, B:L.197, B:I.207, B:L.210, B:Y.211, B:V.277 BCL.14: 23 residues within 4Å: Chain D: G.21, L.24, F.25, A.28, H.32, W.43 Chain E: F.31, V.34, A.35, A.38, H.39, V.42 Chain Q: V.16, Q.20, F.23, I.31 Chain R: Y.24, F.49 Ligands: BCL.16, SPO.34, SPO.36, SPO.37, BCL.38 14 PLIP interactions: 5 interactions with chain D, 1 interactions with chain E, 6 interactions with chain Q, 2 interactions with chain R, Hydrophobic interactions: D:F.25, D:W.43, D:W.43, D:W.43, D:W.43, E:A.38, Q:V.16, Q:Q.20, Q:F.23, Q:F.23, Q:I.31, Q:I.31, R:Y.24, R:F.49 BCL.16: 20 residues within 4Å: Chain D: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain E: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.14, BCL.17, SPO.20, SPO.34 12 PLIP interactions: 3 interactions with chain D, 9 interactions with chain E, Hydrophobic interactions: D:I.31, D:I.31, D:Y.41, E:A.35, E:I.36, E:V.42, E:Y.43, E:W.48, E:W.48, E:W.48, E:F.49 Metal complexes: E:H.39 BCL.17: 25 residues within 4Å: Chain D: I.7, V.16, Q.20, F.23, I.31 Chain E: Y.24 Chain F: L.24, F.25, A.28, H.32, L.35, W.43 Chain G: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: PC1.15, BCL.16, SPO.18, BCL.19, SPO.20, SPO.34 16 PLIP interactions: 6 interactions with chain F, 2 interactions with chain G, 8 interactions with chain D, Hydrophobic interactions: F:L.24, F:L.35, F:W.43, F:W.43, F:W.43, F:W.43, G:A.38, G:W.45, D:I.7, D:V.16, D:Q.20, D:F.23, D:F.23, D:F.23, D:I.31, D:I.31 BCL.19: 20 residues within 4Å: Chain F: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain G: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.17, SPO.18, BCL.21, SPO.25 11 PLIP interactions: 9 interactions with chain G, 2 interactions with chain F, Hydrophobic interactions: G:A.35, G:I.36, G:V.42, G:Y.43, G:W.48, G:W.48, G:W.48, G:F.49, F:I.31, F:Y.41 Metal complexes: G:H.39 BCL.21: 23 residues within 4Å: Chain F: V.16, Q.20, F.23, I.31 Chain G: Y.24 Chain H: L.24, F.25, A.28, H.32, L.35, W.43 Chain I: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.18, BCL.19, SPO.22, BCL.24, SPO.25 17 PLIP interactions: 1 interactions with chain G, 2 interactions with chain I, 8 interactions with chain F, 6 interactions with chain H, Hydrophobic interactions: G:Y.24, I:A.38, I:W.45, F:V.16, F:Q.20, F:Q.20, F:F.23, F:F.23, F:F.23, F:I.31, F:I.31, H:L.24, H:L.35, H:W.43, H:W.43, H:W.43, H:W.43 BCL.24: 20 residues within 4Å: Chain H: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain I: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.21, SPO.22, SPO.26, BCL.27 12 PLIP interactions: 9 interactions with chain I, 3 interactions with chain H, Hydrophobic interactions: I:A.35, I:I.36, I:V.42, I:Y.43, I:W.48, I:W.48, I:W.48, I:F.49, H:I.31, H:I.31, H:Y.41 Metal complexes: I:H.39 BCL.27: 24 residues within 4Å: Chain H: I.7, V.16, Q.20, F.23, I.31 Chain I: Y.24 Chain J: L.24, F.25, A.28, H.32, L.35, W.43 Chain K: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.22, SPO.23, BCL.24, SPO.26, BCL.28 18 PLIP interactions: 6 interactions with chain J, 9 interactions with chain H, 2 interactions with chain K, 1 interactions with chain I, Hydrophobic interactions: J:L.24, J:L.35, J:W.43, J:W.43, J:W.43, J:W.43, H:I.7, H:V.16, H:Q.20, H:Q.20, H:F.23, H:F.23, H:F.23, H:I.31, H:I.31, K:A.38, K:W.45, I:Y.24 BCL.28: 20 residues within 4Å: Chain J: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain K: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: SPO.23, BCL.27, SPO.29, BCL.30 13 PLIP interactions: 9 interactions with chain K, 4 interactions with chain J, Hydrophobic interactions: K:A.35, K:I.36, K:V.42, K:Y.43, K:W.48, K:W.48, K:W.48, K:F.49, J:I.31, J:I.31, J:L.35, J:Y.41 Metal complexes: K:H.39 BCL.30: 18 residues within 4Å: Chain J: F.4 Chain K: Y.24 Chain L: L.24, A.28, H.32, L.35, W.43 Chain M: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.23, BCL.28, SPO.29, BCL.31 11 PLIP interactions: 6 interactions with chain L, 2 interactions with chain J, 3 interactions with chain M, Hydrophobic interactions: L:L.24, L:A.28, L:L.35, L:W.43, L:W.43, L:W.43, J:F.4, J:F.4, M:F.31, M:A.38, M:W.45 BCL.31: 17 residues within 4Å: Chain L: L.24, L.27, A.28, I.31, H.32 Chain M: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain N: W.43 Ligands: BCL.30, BCL.32 11 PLIP interactions: 2 interactions with chain L, 9 interactions with chain M, Hydrophobic interactions: L:I.31, L:I.31, M:A.35, M:I.36, M:V.42, M:Y.43, M:W.48, M:W.48, M:W.48, M:F.49 Metal complexes: M:H.39 BCL.32: 6 residues within 4Å: Chain L: I.31 Chain N: A.28, H.32, L.35, W.43 Ligands: BCL.31 7 PLIP interactions: 2 interactions with chain L, 5 interactions with chain N, Hydrophobic interactions: L:I.31, L:I.31, N:A.28, N:L.35, N:W.43, N:W.43, N:W.43 BCL.33: 19 residues within 4Å: Chain O: L.24, L.27, A.28, I.31, H.32 Chain P: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain Q: W.43 Ligands: BCL.35, SPO.39, BCL.41, SPO.42 9 PLIP interactions: 9 interactions with chain P, Hydrophobic interactions: P:A.35, P:I.36, P:V.42, P:Y.43, P:W.48, P:W.48, P:W.48, P:F.49 Metal complexes: P:H.39 BCL.35: 24 residues within 4Å: Chain O: I.7, V.16, Q.20, F.23, I.31 Chain P: Y.24, F.49 Chain Q: L.24, F.25, A.28, H.32, L.35, W.43 Chain R: F.31, A.35, A.38, H.39, V.42, W.45 Ligands: BCL.33, SPO.36, BCL.38, SPO.39, SPO.42 16 PLIP interactions: 1 interactions with chain P, 2 interactions with chain R, 6 interactions with chain Q, 7 interactions with chain O, Hydrophobic interactions: P:F.49, R:A.38, R:W.45, Q:L.24, Q:L.35, Q:W.43, Q:W.43, Q:W.43, Q:W.43, O:I.7, O:V.16, O:Q.20, O:Q.20, O:F.23, O:F.23, O:I.31 BCL.38: 21 residues within 4Å: Chain D: W.43 Chain Q: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain R: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.14, BCL.35, SPO.36, SPO.37 11 PLIP interactions: 9 interactions with chain R, 2 interactions with chain Q, Hydrophobic interactions: R:A.35, R:I.36, R:V.42, R:Y.43, R:W.48, R:W.48, R:W.48, R:F.49, Q:I.31, Q:Y.41 Metal complexes: R:H.39 BCL.41: 19 residues within 4Å: Chain O: L.24, F.25, A.28, H.32, L.35, W.43 Chain P: F.31, A.38, H.39, V.42 Chain S: A.24, F.25, M.28, K.29, A.31, G.32 Ligands: BCL.33, PC1.40, BCL.107 9 PLIP interactions: 3 interactions with chain S, 6 interactions with chain O, Hydrophobic interactions: S:M.28, S:K.29, S:A.31, O:L.24, O:L.35, O:W.43, O:W.43, O:W.43, O:W.43 BCL.43: 27 residues within 4Å: Chain T: F.98, F.122, A.125, I.126, A.128, Y.129, L.132, W.157, V.158, T.161, Y.163, F.168, H.169, H.174, A.177, I.178, F.181, F.182, S.245, A.246, C.248, M.249 Chain U: Y.211 Ligands: BPH.44, BCL.46, BCL.48, BCL.50 15 PLIP interactions: 14 interactions with chain T, 1 interactions with chain U, Hydrophobic interactions: T:F.98, T:F.122, T:A.125, T:Y.129, T:T.161, T:Y.163, T:F.168, T:A.177, T:I.178, T:I.178, T:I.178, T:F.181, T:F.182, U:Y.211 Hydrogen bonds: T:S.245 BCL.46: 20 residues within 4Å: Chain T: H.169, M.175, I.178, S.179, F.182, T.183 Chain U: F.68, M.123, W.158, L.161, V.176, I.180, H.183, L.184, T.187 Ligands: BCL.43, U10.45, BPH.47, BCL.50, SPO.52 10 PLIP interactions: 3 interactions with chain T, 7 interactions with chain U, Hydrophobic interactions: T:I.178, T:T.183, U:F.68, U:F.68, U:L.161, U:V.176, U:I.180, U:L.184, U:T.187 pi-Stacking: T:F.182 BCL.48: 20 residues within 4Å: Chain T: Y.129, L.132, F.147, I.151, W.152, H.154, L.155, W.157 Chain U: F.198, G.204, I.207, A.208, Y.211, G.212, L.215 Ligands: BCL.43, BPH.44, BCL.50, U10.51, PC1.54 12 PLIP interactions: 6 interactions with chain U, 6 interactions with chain T, Hydrophobic interactions: U:F.198, U:I.207, U:I.207, U:A.208, U:L.215, T:Y.129, T:L.132, T:F.147, T:L.155, T:W.157 pi-Stacking: U:Y.211 Metal complexes: T:H.154 BCL.50: 28 residues within 4Å: Chain T: V.158, Y.163, H.169, F.182 Chain U: M.123, V.127, F.151, A.154, L.157, W.158, L.161, N.188, F.190, S.191, L.197, F.198, H.203, S.206, I.207, L.210, Y.211, V.277, G.281, I.285 Ligands: BCL.43, BCL.46, BPH.47, BCL.48 13 PLIP interactions: 12 interactions with chain U, 1 interactions with chain T, Hydrophobic interactions: U:V.127, U:V.127, U:F.151, U:A.154, U:L.157, U:W.158, U:F.190, U:L.197, U:I.207, U:L.210, U:Y.211, U:V.277 pi-Cation interactions: T:H.169 BCL.55: 20 residues within 4Å: Chain W: G.21, L.24, F.25, A.28, H.32, W.43 Chain X: F.31, A.35, A.38, H.39, V.42 Ligands: SPO.57, BCL.58, SPO.59, PC1.101, SPO.103, BCL.104 Chain m: I.7, F.23 Chain n: F.49 8 PLIP interactions: 1 interactions with chain n, 2 interactions with chain m, 5 interactions with chain W, Hydrophobic interactions: n:F.49, m:I.7, m:F.23, W:F.25, W:W.43, W:W.43, W:W.43, W:W.43 BCL.58: 20 residues within 4Å: Chain W: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain X: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.55, SPO.57, BCL.60, SPO.62 11 PLIP interactions: 9 interactions with chain X, 2 interactions with chain W, Hydrophobic interactions: X:A.35, X:I.36, X:V.42, X:Y.43, X:W.48, X:W.48, X:W.48, X:F.49, W:L.35, W:Y.41 Metal complexes: X:H.39 BCL.60: 24 residues within 4Å: Chain W: I.7, V.16, Q.20, F.23, I.31 Chain X: H.21, Y.24, F.49 Chain Y: L.24, F.25, A.28, H.32, L.35, W.43 Chain Z: F.31, A.35, A.38, H.39, V.42 Ligands: SPO.57, BCL.58, SPO.61, SPO.62, BCL.63 16 PLIP interactions: 7 interactions with chain W, 6 interactions with chain Y, 2 interactions with chain X, 1 interactions with chain Z, Hydrophobic interactions: W:I.7, W:V.16, W:Q.20, W:Q.20, W:F.23, W:I.31, W:I.31, Y:L.24, Y:L.35, Y:W.43, Y:W.43, Y:W.43, Y:W.43, X:Y.24, X:F.49, Z:A.38 BCL.63: 19 residues within 4Å: Chain Y: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain Z: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.60, SPO.64, BCL.65 11 PLIP interactions: 9 interactions with chain Z, 2 interactions with chain Y, Hydrophobic interactions: Z:A.35, Z:I.36, Z:V.42, Z:Y.43, Z:W.48, Z:W.48, Z:W.48, Z:F.49, Y:I.31, Y:Y.41 Metal complexes: Z:H.39 BCL.65: 22 residues within 4Å: Chain 0: L.24, F.25, A.28, H.32, L.35, W.43 Chain 1: F.31, A.35, A.38, H.39, V.42, W.45 Chain Y: V.16, Q.20, F.23 Chain Z: H.21, Y.24 Ligands: SPO.61, BCL.63, SPO.64, SPO.67, BCL.68 11 PLIP interactions: 6 interactions with chain 0, 2 interactions with chain Y, 2 interactions with chain 1, 1 interactions with chain Z, Hydrophobic interactions: 0:L.24, 0:L.35, 0:W.43, 0:W.43, 0:W.43, 0:W.43, Y:V.16, Y:F.23, 1:A.38, 1:W.45, Z:Y.24 BCL.68: 20 residues within 4Å: Chain 0: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain 1: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.65, SPO.67, BCL.69, SPO.72 12 PLIP interactions: 3 interactions with chain 0, 9 interactions with chain 1, Hydrophobic interactions: 0:I.31, 0:L.35, 0:Y.41, 1:A.35, 1:I.36, 1:V.42, 1:Y.43, 1:W.48, 1:W.48, 1:W.48, 1:F.49 Metal complexes: 1:H.39 BCL.69: 21 residues within 4Å: Chain 0: V.16, Q.20 Chain 1: Y.24, F.49 Chain 2: L.24, F.25, A.28, H.32, L.35, W.43 Chain 3: F.31, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.66, SPO.67, BCL.68, BCL.70, SPO.72 11 PLIP interactions: 6 interactions with chain 2, 2 interactions with chain 3, 1 interactions with chain 0, 2 interactions with chain 1, Hydrophobic interactions: 2:L.24, 2:L.35, 2:W.43, 2:W.43, 2:W.43, 2:W.43, 3:A.38, 3:W.45, 0:V.16, 1:Y.24, 1:F.49 BCL.70: 20 residues within 4Å: Chain 2: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain 3: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: SPO.66, BCL.69, BCL.73, SPO.75 14 PLIP interactions: 5 interactions with chain 2, 9 interactions with chain 3, Hydrophobic interactions: 2:L.27, 2:I.31, 2:I.31, 2:L.35, 2:Y.41, 3:A.35, 3:I.36, 3:V.42, 3:Y.43, 3:W.48, 3:W.48, 3:W.48, 3:F.49 Metal complexes: 3:H.39 BCL.73: 23 residues within 4Å: Chain 2: I.7, V.16, Q.20, I.31 Chain 3: H.21, Y.24, M.25 Chain 4: L.24, F.25, A.28, H.32, L.35, W.43 Chain 5: F.31, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.66, BCL.70, BCL.74, SPO.75 13 PLIP interactions: 4 interactions with chain 2, 6 interactions with chain 4, 2 interactions with chain 5, 1 interactions with chain 3, Hydrophobic interactions: 2:I.7, 2:V.16, 2:I.31, 2:I.31, 4:L.24, 4:L.35, 4:W.43, 4:W.43, 4:W.43, 4:W.43, 5:A.38, 5:W.45, 3:Y.24 BCL.74: 20 residues within 4Å: Chain 4: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain 5: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: SPO.71, BCL.73, BCL.76, SPO.79 12 PLIP interactions: 3 interactions with chain 4, 9 interactions with chain 5, Hydrophobic interactions: 4:I.31, 4:L.35, 4:Y.41, 5:A.35, 5:I.36, 5:V.42, 5:Y.43, 5:W.48, 5:W.48, 5:W.48, 5:F.49 Metal complexes: 5:H.39 BCL.76: 23 residues within 4Å: Chain 4: V.16, Q.20 Chain 5: H.21, Y.24, M.25, F.49 Chain 6: L.24, F.25, A.28, H.32, L.35, W.43 Chain 7: F.31, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.71, BCL.74, SPO.77, BCL.78, SPO.79 10 PLIP interactions: 6 interactions with chain 6, 1 interactions with chain 5, 2 interactions with chain 7, 1 interactions with chain 4, Hydrophobic interactions: 6:L.24, 6:L.35, 6:W.43, 6:W.43, 6:W.43, 6:W.43, 5:F.49, 7:A.38, 7:W.45, 4:V.16 BCL.78: 20 residues within 4Å: Chain 6: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain 7: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.76, SPO.77, SPO.80, BCL.81 12 PLIP interactions: 3 interactions with chain 6, 9 interactions with chain 7, Hydrophobic interactions: 6:I.31, 6:L.35, 6:Y.41, 7:A.35, 7:I.36, 7:V.42, 7:Y.43, 7:W.48, 7:W.48, 7:W.48, 7:F.49 Metal complexes: 7:H.39 BCL.81: 23 residues within 4Å: Chain 6: V.16, Q.20, F.23, I.31 Chain 7: Y.24, F.49 Chain 8: L.24, F.25, A.28, H.32, L.35, W.43 Chain 9: F.31, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.77, BCL.78, SPO.80, SPO.82, BCL.84 17 PLIP interactions: 2 interactions with chain 9, 7 interactions with chain 6, 2 interactions with chain 7, 6 interactions with chain 8, Hydrophobic interactions: 9:A.38, 9:W.45, 6:V.16, 6:Q.20, 6:Q.20, 6:F.23, 6:F.23, 6:I.31, 6:I.31, 7:Y.24, 7:F.49, 8:L.24, 8:L.35, 8:W.43, 8:W.43, 8:W.43, 8:W.43 BCL.83: 22 residues within 4Å: Chain 8: V.16, Q.20, F.23, I.31 Chain 9: Y.24, F.49 Ligands: SPO.82, BCL.84, SPO.85, BCL.87, SPO.88 Chain a: L.24, F.25, A.28, H.32, L.35, W.43 Chain b: F.31, A.35, A.38, H.39, V.42 16 PLIP interactions: 8 interactions with chain 8, 6 interactions with chain a, 1 interactions with chain b, 1 interactions with chain 9, Hydrophobic interactions: 8:V.16, 8:Q.20, 8:Q.20, 8:F.23, 8:F.23, 8:F.23, 8:I.31, 8:I.31, a:L.24, a:L.35, a:W.43, a:W.43, a:W.43, a:W.43, b:A.38, 9:F.49 BCL.84: 20 residues within 4Å: Chain 8: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain 9: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.81, SPO.82, BCL.83, SPO.88 11 PLIP interactions: 9 interactions with chain 9, 2 interactions with chain 8, Hydrophobic interactions: 9:A.35, 9:I.36, 9:V.42, 9:Y.43, 9:W.48, 9:W.48, 9:W.48, 9:F.49, 8:I.31, 8:Y.41 Metal complexes: 9:H.39 BCL.86: 23 residues within 4Å: Ligands: SPO.85, BCL.87, SPO.89, BCL.90, SPO.91 Chain a: V.16, Q.20, F.23, I.31 Chain b: H.21, Y.24, F.49 Chain c: L.24, F.25, A.28, H.32, L.35, W.43 Chain d: F.31, A.38, H.39, V.42, W.45 17 PLIP interactions: 8 interactions with chain a, 6 interactions with chain c, 1 interactions with chain b, 2 interactions with chain d, Hydrophobic interactions: a:V.16, a:Q.20, a:Q.20, a:F.23, a:F.23, a:F.23, a:I.31, a:I.31, c:L.24, c:L.35, c:W.43, c:W.43, c:W.43, c:W.43, b:F.49, d:A.38, d:W.45 BCL.87: 21 residues within 4Å: Ligands: BCL.83, SPO.85, BCL.86, SPO.91 Chain a: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain b: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain c: W.43 11 PLIP interactions: 9 interactions with chain b, 2 interactions with chain a, Hydrophobic interactions: b:A.35, b:I.36, b:V.42, b:Y.43, b:W.48, b:W.48, b:W.48, b:F.49, a:I.31, a:Y.41 Metal complexes: b:H.39 BCL.90: 21 residues within 4Å: Ligands: BCL.86, SPO.89, BCL.92, SPO.93 Chain c: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain d: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48 Chain e: W.43, L.44 13 PLIP interactions: 2 interactions with chain c, 10 interactions with chain d, 1 interactions with chain e, Hydrophobic interactions: c:L.35, c:Y.41, d:F.31, d:A.35, d:I.36, d:H.39, d:V.42, d:Y.43, d:W.48, d:W.48, d:W.48, e:L.44 Metal complexes: d:H.39 BCL.92: 20 residues within 4Å: Ligands: SPO.89, BCL.90, SPO.93, BCL.94 Chain c: V.16, Q.20, F.23, I.31 Chain d: Y.24 Chain e: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain f: F.31, V.34, A.35, H.39 12 PLIP interactions: 7 interactions with chain e, 4 interactions with chain c, 1 interactions with chain d, Hydrophobic interactions: e:L.24, e:F.25, e:A.28, e:L.35, e:W.43, e:W.43, e:W.43, c:Q.20, c:F.23, c:I.31, c:I.31, d:Y.24 BCL.94: 17 residues within 4Å: Ligands: BCL.92, BCL.95 Chain e: L.24, A.28, I.31, H.32, L.35, Y.41 Chain f: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 13 PLIP interactions: 4 interactions with chain e, 9 interactions with chain f, Hydrophobic interactions: e:I.31, e:I.31, e:L.35, e:Y.41, f:A.35, f:I.36, f:V.42, f:Y.43, f:W.48, f:W.48, f:W.48, f:F.49 Metal complexes: f:H.39 BCL.95: 12 residues within 4Å: Ligands: BCL.94, BCL.96 Chain g: A.28, H.32, L.35, W.43 Chain h: V.34, A.35, A.38, H.39, V.42, W.45 7 PLIP interactions: 2 interactions with chain h, 5 interactions with chain g, Hydrophobic interactions: h:V.42, h:W.45, g:A.28, g:L.35, g:W.43, g:W.43, g:W.43 BCL.96: 13 residues within 4Å: Ligands: BCL.95, BCL.97 Chain g: L.24, A.28, I.31, H.32 Chain h: L.28, F.31, S.32, A.35, H.39, V.42, W.48 7 PLIP interactions: 6 interactions with chain h, 1 interactions with chain g, Hydrophobic interactions: h:F.31, h:A.35, h:V.42, h:W.48, g:I.31 pi-Stacking: h:H.39 Metal complexes: h:H.39 BCL.97: 13 residues within 4Å: Ligands: BCL.96, BCL.98 Chain g: I.31 Chain i: A.28, H.32, L.35, W.43 Chain j: F.31, V.34, A.35, A.38, H.39, V.42 7 PLIP interactions: 5 interactions with chain i, 1 interactions with chain j, 1 interactions with chain g, Hydrophobic interactions: i:A.28, i:L.35, i:W.43, i:W.43, i:W.43, j:V.42, g:I.31 BCL.98: 11 residues within 4Å: Ligands: BCL.97 Chain i: A.28, I.31, H.32, L.35, Y.41 Chain j: F.31, A.35, H.39, V.42, W.48 5 PLIP interactions: 2 interactions with chain j, 3 interactions with chain i, Hydrophobic interactions: j:V.42, j:W.48, i:I.31, i:L.35, i:Y.41 BCL.100: 19 residues within 4Å: Ligands: SPO.99, BCL.102, SPO.105, BCL.107 Chain k: L.24, A.28, I.31, H.32, L.35, Y.41 Chain l: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 11 PLIP interactions: 9 interactions with chain l, 2 interactions with chain k, Hydrophobic interactions: l:A.35, l:I.36, l:V.42, l:Y.43, l:W.48, l:W.48, l:W.48, l:F.49, k:L.35, k:Y.41 Metal complexes: l:H.39 BCL.102: 21 residues within 4Å: Ligands: SPO.99, BCL.100, BCL.104, SPO.105 Chain k: V.16, A.19, Q.20, F.23 Chain l: Y.24, F.49 Chain m: L.24, F.25, A.28, H.32, L.35, W.43 Chain n: F.31, A.35, A.38, H.39, V.42 15 PLIP interactions: 6 interactions with chain m, 7 interactions with chain k, 1 interactions with chain n, 1 interactions with chain l, Hydrophobic interactions: m:L.24, m:L.35, m:W.43, m:W.43, m:W.43, m:W.43, k:V.16, k:A.19, k:Q.20, k:Q.20, k:F.23, k:F.23, k:F.23, n:V.42, l:F.49 BCL.104: 18 residues within 4Å: Ligands: BCL.55, SPO.59, BCL.102 Chain m: L.24, A.28, I.31, H.32, L.35, Y.41 Chain n: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 11 PLIP interactions: 2 interactions with chain m, 9 interactions with chain n, Hydrophobic interactions: m:L.35, m:Y.41, n:A.35, n:I.36, n:V.42, n:Y.43, n:W.48, n:W.48, n:W.48, n:F.49 Metal complexes: n:H.39 BCL.107: 20 residues within 4Å: Ligands: PC1.40, BCL.41, BCL.100 Chain k: L.24, F.25, A.28, H.32, L.35, W.43 Chain l: F.31, A.35, A.38, H.39, V.42 Chain o: A.24, F.25, M.28, K.29, A.31, G.32 9 PLIP interactions: 3 interactions with chain o, 6 interactions with chain k, Hydrophobic interactions: o:A.24, o:M.28, o:A.31, k:L.24, k:L.35, k:W.43, k:W.43, k:W.43, k:W.43

4 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.3: 26 residues within 4Å: Chain A: I.50, I.90, A.94, A.97, F.98, W.101, E.105, I.118, A.121, F.122, A.125, Y.149, S.238, L.239, V.242 Chain B: Y.211, A.214, L.215, A.218, M.219, W.253, M.257 Ligands: BCL.1, BCL.2, U10.9, PC1.13 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.50, A:I.90, A:A.94, A:A.97, A:A.121, A:F.122, A:F.122, A:A.125, A:Y.149, A:Y.149, A:L.239, A:V.242, B:Y.211, B:A.214, B:L.215, B:A.218 BPH.6: 18 residues within 4Å: Chain A: F.182, A.185, L.186, A.189, L.190, L.220 Chain B: S.60, G.64, A.126, W.130, T.147, A.150, F.151, A.154, A.274, T.278 Ligands: BCL.5, BCL.8 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.182, A:A.185, A:A.189, B:A.150, B:F.151, B:F.151, B:T.278 pi-Stacking: B:F.151 BPH.44: 23 residues within 4Å: Chain T: A.94, F.98, W.101, E.105, I.118, A.121, F.122, A.125, Y.149, G.150, S.238, L.239, V.242 Chain U: Y.211, A.214, L.215, A.218, M.219, W.253, M.257 Ligands: BCL.43, BCL.48, U10.51 9 PLIP interactions: 7 interactions with chain T, 2 interactions with chain U Hydrophobic interactions: T:A.94, T:A.121, T:F.122, T:F.122, T:Y.149, T:L.239, T:V.242, U:A.214, U:A.218 BPH.47: 18 residues within 4Å: Chain T: F.182, A.185, L.186, A.189, L.190, L.220 Chain U: S.60, G.64, A.126, W.130, T.147, A.150, F.151, A.154, A.274, T.278 Ligands: BCL.46, BCL.50 9 PLIP interactions: 5 interactions with chain U, 4 interactions with chain T Hydrophobic interactions: U:A.150, U:F.151, U:F.151, U:T.278, T:F.182, T:A.185, T:A.189, T:L.190 pi-Stacking: U:F.151

4 x U10: UBIQUINONE-10(Non-covalent)

U10.4: 18 residues within 4Å: Chain A: S.179, F.180, T.183, L.190, H.191, L.194, V.195, P.210, E.213, D.214, F.217, Y.223, S.224, I.225, G.226, T.227, I.230 Ligands: BCL.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.180, A:L.190, A:L.194, A:V.195, A:F.217, A:F.217, A:I.225, A:I.225, A:I.230, A:I.230, A:I.230 Hydrogen bonds: A:D.214 U10.9: 23 residues within 4Å: Chain A: V.27, F.30, V.32, G.36, F.40, W.101 Chain B: M.219, H.220, T.223, A.249, W.253, M.257, F.259, N.260, A.261, T.262, M.263, I.266, W.269 Ligands: BCL.2, BPH.3, PC1.11, PC1.13 14 PLIP interactions: 4 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:V.27, A:F.30, A:V.32, A:F.40, B:M.219, B:W.253, B:F.259, B:A.261, B:I.266, B:W.269, B:W.269 Hydrogen bonds: B:T.223, B:A.261 pi-Stacking: B:W.253 U10.45: 29 residues within 4Å: Chain T: F.120, F.124, I.176, S.179, F.180, T.183, L.186, A.187, L.190, H.191, L.194, E.213, D.214, F.217, V.221, Y.223, S.224, I.225, G.226, T.227, I.230, L.233, L.236, L.239, S.240, F.243, F.244 Chain U: I.7 Ligands: BCL.46 20 PLIP interactions: 18 interactions with chain T, 2 interactions with chain U Hydrophobic interactions: T:F.124, T:F.180, T:F.180, T:L.186, T:A.187, T:L.190, T:F.217, T:F.217, T:F.217, T:V.221, T:I.225, T:I.230, T:L.239, T:F.243, T:F.243, T:F.244, U:I.7, U:I.7 Hydrogen bonds: T:I.225, T:G.226 U10.51: 23 residues within 4Å: Chain T: V.27, F.30, V.32, G.36, V.37, F.40, W.101 Chain U: M.219, H.220, T.223, A.249, W.253, M.257, F.259, N.260, A.261, T.262, M.263, I.266, W.269 Ligands: BPH.44, BCL.48, PC1.54 15 PLIP interactions: 10 interactions with chain U, 5 interactions with chain T Hydrophobic interactions: U:M.219, U:W.253, U:F.259, U:A.261, U:I.266, U:W.269, U:W.269, T:V.27, T:F.30, T:F.30, T:V.37, T:F.40 Hydrogen bonds: U:T.223, U:A.261 pi-Stacking: U:W.253

2 x FE2: FE (II) ION(Non-covalent)

FE2.7: 5 residues within 4Å: Chain A: H.191, H.231 Chain B: H.220, E.235, H.267 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Metal complexes: A:H.191, B:H.220, B:E.235, B:E.235, B:H.267 FE2.49: 5 residues within 4Å: Chain T: H.191, H.231 Chain U: H.220, E.235, H.267 5 PLIP interactions: 2 interactions with chain T, 3 interactions with chain U Metal complexes: T:H.191, T:H.231, U:H.220, U:E.235, U:H.267

36 x SPO: SPHEROIDENE(Non-covalent)

SPO.10: 22 residues within 4Å: Chain B: W.67, F.68, I.71, G.72, F.75, W.76, F.86, F.106, L.117, S.120, M.123, W.158, G.162, F.163, W.172, V.176, Y.178, G.179, I.180, H.183 Chain N: M.30 Ligands: BCL.5 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.67, B:F.68, B:F.68, B:F.68, B:I.71, B:F.75, B:F.86, B:F.106, B:F.106, B:F.163, B:W.172, B:V.176, B:V.176, B:I.180 SPO.18: 22 residues within 4Å: Chain E: L.7 Chain F: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain G: E.19, L.20, V.23, Y.24, G.27, L.28 Chain H: A.28, H.32, L.36 Ligands: BCL.17, BCL.19, SPO.20, BCL.21, SPO.25 15 PLIP interactions: 2 interactions with chain H, 5 interactions with chain F, 7 interactions with chain G, 1 interactions with chain E Hydrophobic interactions: H:A.28, H:H.32, F:F.23, F:L.24, F:L.24, F:I.31, F:I.34, G:E.19, G:L.20, G:L.20, G:V.23, G:L.28, G:L.28, G:L.28, E:L.7 SPO.20: 14 residues within 4Å: Chain E: Y.43, F.49 Chain F: F.17, G.21 Chain G: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: BCL.16, BCL.17, SPO.18, SPO.34 9 PLIP interactions: 4 interactions with chain G, 5 interactions with chain E Hydrophobic interactions: G:F.31, G:V.34, G:A.38, G:A.41, E:F.49, E:F.49, E:F.49, E:F.49 Hydrogen bonds: E:Y.43 SPO.22: 21 residues within 4Å: Chain F: K.6, I.7, I.10 Chain G: L.7 Chain H: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain I: L.20, V.23, Y.24, L.28 Chain J: F.25, A.28 Ligands: BCL.21, BCL.24, SPO.25, BCL.27 14 PLIP interactions: 5 interactions with chain I, 5 interactions with chain H, 2 interactions with chain J, 2 interactions with chain F Hydrophobic interactions: I:L.20, I:L.20, I:V.23, I:Y.24, I:Y.24, H:F.23, H:L.24, H:L.24, H:I.31, H:I.34, J:F.25, J:A.28, F:I.7, F:I.10 SPO.23: 19 residues within 4Å: Chain H: K.6, I.7, I.10 Chain J: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain K: L.20, Y.24, L.28 Chain L: H.32, L.36 Ligands: SPO.26, BCL.27, BCL.28, BCL.30 14 PLIP interactions: 4 interactions with chain K, 5 interactions with chain J, 4 interactions with chain H, 1 interactions with chain L Hydrophobic interactions: K:L.20, K:Y.24, K:L.28, K:L.28, J:F.23, J:L.24, J:L.24, J:I.31, J:I.34, H:K.6, H:K.6, H:I.7, H:I.10, L:H.32 SPO.25: 13 residues within 4Å: Chain G: Y.43, F.49 Chain H: G.21 Chain I: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: SPO.18, BCL.19, BCL.21, SPO.22 10 PLIP interactions: 7 interactions with chain I, 3 interactions with chain G Hydrophobic interactions: I:F.31, I:V.34, I:A.38, I:A.41, I:V.42, I:W.45, I:W.45, G:F.49, G:F.49, G:F.49 SPO.26: 12 residues within 4Å: Chain I: F.49 Chain J: G.21, K.50 Chain K: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: SPO.23, BCL.24, BCL.27 5 PLIP interactions: 4 interactions with chain K, 1 interactions with chain I Hydrophobic interactions: K:F.31, K:V.34, K:V.34, K:V.42, I:F.49 SPO.29: 10 residues within 4Å: Chain K: Y.43, F.49 Chain L: Q.20 Chain M: F.31, V.34, A.41, V.42, W.45 Ligands: BCL.28, BCL.30 7 PLIP interactions: 4 interactions with chain M, 3 interactions with chain K Hydrophobic interactions: M:F.31, M:V.34, M:V.42, M:W.45, K:F.49, K:F.49, K:F.49 SPO.34: 25 residues within 4Å: Chain D: F.17, Q.20, F.23, L.24, L.27, M.30, I.34 Chain E: L.20, V.23, Y.24, G.27, L.28, F.31 Chain F: H.32 Chain Q: F.4, K.6, I.7, M.9, I.10 Chain R: L.7 Ligands: BCL.14, BCL.16, BCL.17, SPO.20, SPO.37 15 PLIP interactions: 5 interactions with chain D, 4 interactions with chain E, 4 interactions with chain Q, 1 interactions with chain R, 1 interactions with chain F Hydrophobic interactions: D:F.17, D:F.23, D:F.23, D:L.24, D:L.27, E:L.20, E:V.23, E:L.28, E:F.31, Q:K.6, Q:I.7, Q:I.7, Q:M.9, R:L.7, F:H.32 SPO.36: 26 residues within 4Å: Chain D: F.25, A.28, V.29, H.32, L.33, L.36 Chain O: I.7, I.10 Chain P: L.7 Chain Q: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain R: L.20, V.23, Y.24, G.27, L.28 Ligands: BCL.14, BCL.35, SPO.37, BCL.38, SPO.39 13 PLIP interactions: 5 interactions with chain Q, 3 interactions with chain D, 2 interactions with chain O, 2 interactions with chain R, 1 interactions with chain P Hydrophobic interactions: Q:F.23, Q:L.24, Q:L.24, Q:I.31, Q:I.34, D:F.25, D:A.28, D:H.32, O:I.7, O:I.10, R:L.20, R:V.23, P:L.7 SPO.37: 14 residues within 4Å: Chain D: F.17, Q.20, G.21 Chain E: V.34, A.38, A.41, V.42, W.45 Chain R: Y.43, F.49 Ligands: BCL.14, SPO.34, SPO.36, BCL.38 7 PLIP interactions: 5 interactions with chain E, 2 interactions with chain R Hydrophobic interactions: E:V.34, E:A.38, E:A.41, E:V.42, E:W.45, R:F.49, R:F.49 SPO.39: 10 residues within 4Å: Chain P: F.49 Chain Q: Q.20 Chain R: V.34, A.38, A.41, V.42, W.45 Ligands: BCL.33, BCL.35, SPO.36 7 PLIP interactions: 1 interactions with chain P, 6 interactions with chain R Hydrophobic interactions: P:F.49, R:V.34, R:A.38, R:A.41, R:W.45, R:W.45, R:W.45 SPO.42: 27 residues within 4Å: Chain O: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain P: V.23, Y.24, G.27, L.28 Chain Q: F.25, A.28, V.29, H.32, L.33, L.36 Chain S: L.19, R.20, W.22, V.23, A.24, M.27 Ligands: BCL.33, BCL.35 Chain o: F.7, H.10 16 PLIP interactions: 1 interactions with chain o, 6 interactions with chain S, 3 interactions with chain Q, 5 interactions with chain O, 1 interactions with chain P Hydrophobic interactions: o:F.7, S:L.19, S:L.19, S:W.22, S:V.23, S:V.23, S:A.24, Q:A.28, Q:V.29, Q:V.29, O:F.23, O:L.24, O:L.24, O:I.31, O:I.34, P:V.23 SPO.52: 22 residues within 4Å: Chain 8: L.33 Chain U: W.67, F.68, I.71, G.72, F.75, W.76, F.86, F.106, L.117, S.120, M.123, W.158, G.162, F.163, W.172, V.176, Y.178, G.179, I.180, H.183 Ligands: BCL.46 15 PLIP interactions: 14 interactions with chain U, 1 interactions with chain 8 Hydrophobic interactions: U:W.67, U:F.68, U:F.68, U:F.68, U:I.71, U:F.75, U:F.86, U:F.106, U:F.106, U:F.163, U:W.172, U:V.176, U:V.176, U:I.180, 8:L.33 SPO.57: 26 residues within 4Å: Chain W: F.17, Q.20, F.23, L.24, L.27, M.30, I.34 Chain X: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain Y: F.25, A.28, V.29, H.32, L.33, L.36 Ligands: BCL.55, BCL.58, BCL.60, SPO.62 Chain m: K.6 Chain n: L.7 18 PLIP interactions: 5 interactions with chain W, 8 interactions with chain X, 3 interactions with chain Y, 1 interactions with chain m, 1 interactions with chain n Hydrophobic interactions: W:F.17, W:F.23, W:F.23, W:L.24, W:L.27, X:L.20, X:L.20, X:V.23, X:Y.24, X:Y.24, X:L.28, X:L.28, X:F.31, Y:F.25, Y:A.28, Y:L.33, m:K.6, n:L.7 SPO.59: 12 residues within 4Å: Chain W: F.17, Q.20, K.50 Chain X: V.34, A.38, A.41, V.42, W.45 Ligands: BCL.55, SPO.103, BCL.104 Chain n: F.49 9 PLIP interactions: 5 interactions with chain X, 2 interactions with chain n, 2 interactions with chain W Hydrophobic interactions: X:V.34, X:A.38, X:A.41, X:V.42, X:W.45, n:F.49, n:F.49, W:F.17 Hydrogen bonds: W:K.50 SPO.61: 26 residues within 4Å: Chain 0: F.25, A.28, V.29, H.32, L.33, L.36 Chain W: F.4, K.6, I.7 Chain X: L.7 Chain Y: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain Z: E.19, L.20, V.23, Y.24, G.27, L.28 Ligands: BCL.60, SPO.62, BCL.65 23 PLIP interactions: 10 interactions with chain Z, 4 interactions with chain 0, 3 interactions with chain W, 5 interactions with chain Y, 1 interactions with chain X Hydrophobic interactions: Z:E.19, Z:L.20, Z:L.20, Z:L.20, Z:V.23, Z:V.23, Z:Y.24, Z:Y.24, Z:L.28, Z:L.28, 0:F.25, 0:A.28, 0:V.29, 0:V.29, W:F.4, W:K.6, W:K.6, Y:F.23, Y:L.24, Y:L.24, Y:I.31, Y:I.34, X:L.7 SPO.62: 15 residues within 4Å: Chain W: F.11 Chain X: F.49 Chain Y: F.17, Q.20, G.21 Chain Z: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: SPO.57, BCL.58, BCL.60, SPO.61 10 PLIP interactions: 5 interactions with chain Z, 1 interactions with chain Y, 3 interactions with chain X, 1 interactions with chain W Hydrophobic interactions: Z:F.31, Z:A.38, Z:A.41, Z:V.42, Z:W.45, Y:F.17, X:F.49, X:F.49, X:F.49, W:F.11 SPO.64: 11 residues within 4Å: Chain 0: F.17, G.21 Chain 1: F.31, V.34, A.38, A.41, V.42, W.45 Chain Z: F.49 Ligands: BCL.63, BCL.65 10 PLIP interactions: 7 interactions with chain 1, 3 interactions with chain Z Hydrophobic interactions: 1:F.31, 1:V.34, 1:A.38, 1:A.41, 1:V.42, 1:W.45, 1:W.45, Z:F.49, Z:F.49, Z:F.49 SPO.66: 23 residues within 4Å: Chain 0: F.4, K.6, I.7 Chain 1: L.7 Chain 2: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain 3: E.19, L.20, V.23, Y.24, G.27, L.28 Chain 4: L.36, W.43 Ligands: BCL.69, BCL.70, BCL.73, SPO.75 21 PLIP interactions: 5 interactions with chain 2, 1 interactions with chain 1, 12 interactions with chain 3, 3 interactions with chain 0 Hydrophobic interactions: 2:F.23, 2:L.24, 2:L.24, 2:I.31, 2:I.34, 1:L.7, 3:E.19, 3:L.20, 3:L.20, 3:L.20, 3:V.23, 3:V.23, 3:Y.24, 3:Y.24, 3:Y.24, 3:L.28, 3:L.28, 3:L.28, 0:F.4, 0:K.6, 0:K.6 SPO.67: 22 residues within 4Å: Chain 0: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain 1: E.19, L.20, V.23, Y.24, G.27, L.28 Chain 2: F.25, V.29, L.36 Chain Y: F.4, K.6 Ligands: BCL.65, BCL.68, BCL.69, SPO.72 18 PLIP interactions: 5 interactions with chain 0, 1 interactions with chain Y, 11 interactions with chain 1, 1 interactions with chain 2 Hydrophobic interactions: 0:F.23, 0:L.24, 0:L.24, 0:I.31, 0:I.34, Y:F.4, 1:E.19, 1:L.20, 1:L.20, 1:L.20, 1:V.23, 1:V.23, 1:Y.24, 1:Y.24, 1:L.28, 1:L.28, 1:L.28, 2:V.29 SPO.71: 19 residues within 4Å: Chain 2: F.4, K.6 Chain 4: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain 5: L.20, Y.24, L.28 Chain 6: F.25, V.29, L.36 Ligands: BCL.74, SPO.75, BCL.76, SPO.79 15 PLIP interactions: 3 interactions with chain 2, 5 interactions with chain 5, 5 interactions with chain 4, 2 interactions with chain 6 Hydrophobic interactions: 2:F.4, 2:K.6, 2:K.6, 5:L.20, 5:L.20, 5:L.20, 5:Y.24, 5:L.28, 4:F.23, 4:L.24, 4:L.24, 4:I.31, 4:I.34, 6:F.25, 6:V.29 SPO.72: 12 residues within 4Å: Chain 1: Y.43, F.49 Chain 2: F.17, Q.20, G.21 Chain 3: V.34, A.38, A.41, W.45 Ligands: SPO.67, BCL.68, BCL.69 7 PLIP interactions: 4 interactions with chain 3, 3 interactions with chain 1 Hydrophobic interactions: 3:V.34, 3:A.38, 3:A.41, 3:W.45, 1:F.49, 1:F.49, 1:F.49 SPO.75: 12 residues within 4Å: Chain 3: Y.43, F.49 Chain 4: G.21 Chain 5: V.34, A.38, A.41, V.42, W.45 Ligands: SPO.66, BCL.70, SPO.71, BCL.73 7 PLIP interactions: 4 interactions with chain 5, 3 interactions with chain 3 Hydrophobic interactions: 5:V.34, 5:A.41, 5:V.42, 5:W.45, 3:F.49, 3:F.49, 3:F.49 SPO.77: 21 residues within 4Å: Chain 4: F.4, K.6 Chain 6: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain 7: L.20, Y.24, L.28 Chain 8: F.25, A.28, H.32, L.36 Ligands: BCL.76, BCL.78, SPO.79, SPO.80, BCL.81 16 PLIP interactions: 3 interactions with chain 4, 3 interactions with chain 8, 5 interactions with chain 6, 5 interactions with chain 7 Hydrophobic interactions: 4:F.4, 4:K.6, 4:K.6, 8:F.25, 8:A.28, 8:H.32, 6:F.23, 6:L.24, 6:L.24, 6:I.31, 6:I.34, 7:L.20, 7:L.20, 7:L.20, 7:Y.24, 7:L.28 SPO.79: 10 residues within 4Å: Chain 5: F.49 Chain 6: F.17 Chain 7: A.38, A.41, V.42, W.45 Ligands: SPO.71, BCL.74, BCL.76, SPO.77 5 PLIP interactions: 3 interactions with chain 7, 2 interactions with chain 5 Hydrophobic interactions: 7:A.38, 7:A.41, 7:W.45, 5:F.49, 5:F.49 SPO.80: 10 residues within 4Å: Chain 7: F.49 Chain 8: K.50, Y.51 Chain 9: A.38, A.41, V.42, W.45 Ligands: SPO.77, BCL.78, BCL.81 7 PLIP interactions: 4 interactions with chain 9, 1 interactions with chain 8, 2 interactions with chain 7 Hydrophobic interactions: 9:A.38, 9:V.42, 9:W.45, 9:W.45, 7:F.49, 7:F.49 Hydrogen bonds: 8:Y.51 SPO.82: 19 residues within 4Å: Chain 6: K.6, I.7 Chain 8: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain 9: L.20, Y.24 Ligands: BCL.81, BCL.83, BCL.84, SPO.88 Chain a: F.25, A.28, H.32, L.36 13 PLIP interactions: 5 interactions with chain 9, 5 interactions with chain 8, 3 interactions with chain a Hydrophobic interactions: 9:L.20, 9:L.20, 9:L.20, 9:L.20, 9:Y.24, 8:F.23, 8:L.24, 8:L.24, 8:I.31, 8:I.34, a:F.25, a:A.28, a:H.32 SPO.85: 25 residues within 4Å: Chain 8: K.6, I.7, I.10 Ligands: BCL.83, BCL.86, BCL.87, SPO.88, SPO.91 Chain a: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain b: E.19, L.20, V.23, Y.24, L.28 Chain c: F.25, A.28, V.29, H.32, L.36 15 PLIP interactions: 6 interactions with chain b, 5 interactions with chain a, 3 interactions with chain c, 1 interactions with chain 8 Hydrophobic interactions: b:E.19, b:L.20, b:L.20, b:V.23, b:Y.24, b:L.28, a:F.23, a:L.24, a:L.24, a:I.31, a:I.34, c:A.28, c:V.29, c:H.32, 8:I.7 SPO.88: 10 residues within 4Å: Chain 9: F.49 Ligands: SPO.82, BCL.83, BCL.84, SPO.85 Chain b: V.34, A.38, A.41, I.44, W.45 4 PLIP interactions: 4 interactions with chain b Hydrophobic interactions: b:V.34, b:A.38, b:A.41, b:W.45 SPO.89: 19 residues within 4Å: Ligands: BCL.86, BCL.90, SPO.91, BCL.92 Chain a: K.6, I.7, I.10 Chain c: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain d: L.20, Y.24 Chain e: A.28, H.32, L.36 9 PLIP interactions: 2 interactions with chain e, 5 interactions with chain c, 1 interactions with chain a, 1 interactions with chain d Hydrophobic interactions: e:A.28, e:H.32, c:F.23, c:L.24, c:L.24, c:I.31, c:I.34, a:I.7, d:L.20 SPO.91: 12 residues within 4Å: Ligands: SPO.85, BCL.86, BCL.87, SPO.89 Chain b: Y.43, F.49 Chain d: F.31, V.34, A.38, A.41, V.42, W.45 8 PLIP interactions: 2 interactions with chain b, 6 interactions with chain d Hydrophobic interactions: b:F.49, d:F.31, d:V.34, d:A.38, d:A.41, d:V.42, d:W.45 Hydrogen bonds: b:Y.43 SPO.93: 8 residues within 4Å: Ligands: BCL.90, BCL.92 Chain d: F.49 Chain e: Q.20, K.50 Chain f: F.31, A.38, V.42 4 PLIP interactions: 3 interactions with chain f, 1 interactions with chain d Hydrophobic interactions: f:F.31, f:A.38, f:V.42, d:F.49 SPO.99: 25 residues within 4Å: Chain S: F.7 Ligands: BCL.100, BCL.102, SPO.105 Chain k: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain l: E.19, L.20, V.23, Y.24, G.27, L.28 Chain m: F.25, A.28, V.29, H.32, L.33 Chain o: L.19, V.23, M.27 20 PLIP interactions: 2 interactions with chain S, 6 interactions with chain l, 4 interactions with chain o, 5 interactions with chain k, 3 interactions with chain m Hydrophobic interactions: S:F.7, S:F.7, l:E.19, l:V.23, l:Y.24, l:Y.24, l:L.28, l:L.28, o:L.19, o:L.19, o:V.23, o:V.23, k:F.23, k:L.24, k:L.24, k:I.31, k:I.34, m:F.25, m:A.28, m:V.29 SPO.103: 24 residues within 4Å: Chain W: F.25, A.28, V.29, H.32, L.33, L.36 Ligands: BCL.55, SPO.59, SPO.105 Chain k: I.7, I.10 Chain l: L.7 Chain m: Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain n: E.19, L.20, V.23, Y.24, L.28 17 PLIP interactions: 5 interactions with chain m, 1 interactions with chain l, 8 interactions with chain n, 1 interactions with chain W, 2 interactions with chain k Hydrophobic interactions: m:F.23, m:L.24, m:L.24, m:I.31, m:I.34, l:L.7, n:E.19, n:L.20, n:L.20, n:L.20, n:V.23, n:Y.24, n:Y.24, n:L.28, W:A.28, k:I.7, k:I.10 SPO.105: 12 residues within 4Å: Ligands: SPO.99, BCL.100, BCL.102, SPO.103 Chain l: F.49 Chain m: G.21, K.50 Chain n: F.31, V.34, A.38, V.42, W.45 6 PLIP interactions: 5 interactions with chain n, 1 interactions with chain l Hydrophobic interactions: n:V.34, n:A.38, n:V.42, n:W.45, n:W.45, l:F.49

9 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.11: 17 residues within 4Å: Chain A: F.30 Chain B: F.209, M.257, G.258, F.259, W.269, M.273 Chain C: L.24, I.28, L.31, Q.32, M.36, Y.40, F.56 Ligands: BCL.2, U10.9, PC1.13 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:F.209, B:F.259, B:F.259, B:W.269, B:W.269, C:L.24, C:I.28, C:L.31 PC1.12: 17 residues within 4Å: Chain A: I.50, P.62, Q.63, Y.149, I.151, W.152 Chain B: P.201, G.204, L.205, H.302, M.304 Chain C: N.9, S.14, I.17, Y.18, W.21 Ligands: BCL.2 12 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: A:I.50, A:P.62, A:I.151, A:I.151, B:P.201, B:L.205, B:L.205, C:W.21 Hydrogen bonds: A:Q.63, C:N.9, C:S.14 Salt bridges: B:H.302 PC1.13: 16 residues within 4Å: Chain A: G.28, P.29, F.30, F.40, I.47 Chain C: L.42, N.52, Q.53, G.54, P.55 Chain D: R.15 Ligands: BCL.1, BPH.3, U10.9, PC1.11, PC1.15 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: C:P.55, A:F.30, A:F.40, A:I.47 Salt bridges: D:R.15 PC1.15: 18 residues within 4Å: Chain A: F.40, A.44 Chain C: N.52, Q.53, G.54, P.55 Chain D: F.11, R.15, V.16, A.19, V.22, F.25 Chain F: R.14, R.15, V.18, F.25 Ligands: PC1.13, BCL.17 5 PLIP interactions: 1 interactions with chain A, 3 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: A:A.44, D:V.22, D:F.25, F:F.25 Salt bridges: D:R.15 PC1.40: 19 residues within 4Å: Chain A: L.76, Q.88, T.91, I.92, T.95, L.134, G.141, W.143 Chain S: F.39, L.42, R.49, R.53 Ligands: BCL.41, BCL.107 Chain l: V.34, A.38, V.42, I.44, W.45 14 PLIP interactions: 5 interactions with chain S, 6 interactions with chain A, 3 interactions with chain l Hydrophobic interactions: S:F.39, S:F.39, S:L.42, S:L.42, A:L.76, A:T.91, A:I.92, A:L.134, A:L.134, l:V.34, l:A.38, l:V.42 Salt bridges: S:R.53 Hydrogen bonds: A:L.76 PC1.54: 17 residues within 4Å: Chain T: F.30 Chain U: F.209, M.257, G.258, F.259, W.269, W.272, M.273 Chain V: L.24, I.28, L.31, Q.32, M.36, Y.40, F.56 Ligands: BCL.48, U10.51 8 PLIP interactions: 5 interactions with chain U, 3 interactions with chain V Hydrophobic interactions: U:F.209, U:W.269, U:W.269, U:W.272, U:M.273, V:L.24, V:I.28, V:L.31 PC1.56: 16 residues within 4Å: Chain V: N.52, Q.53, G.54, P.55 Chain W: F.11, R.15, V.16, A.19 Chain Y: R.14, R.15, F.17, V.18, G.21, V.22, F.25 Ligands: PC1.101 3 PLIP interactions: 1 interactions with chain W, 2 interactions with chain Y Salt bridges: W:R.15 Hydrophobic interactions: Y:V.18, Y:F.25 PC1.101: 25 residues within 4Å: Chain T: A.2, V.27, G.28, F.40, A.44 Chain V: N.52, E.94 Chain W: D.12, R.14, R.15, V.18, A.19, G.21, V.22, F.23, F.25, L.26, L.27 Chain Y: F.25 Ligands: BCL.55, PC1.56 Chain m: F.11, R.15, V.16, F.23 20 PLIP interactions: 11 interactions with chain W, 3 interactions with chain T, 1 interactions with chain V, 3 interactions with chain m, 2 interactions with chain Y Hydrophobic interactions: W:V.18, W:V.18, W:A.19, W:F.23, W:F.23, W:F.25, W:F.25, W:L.26, W:L.26, T:F.40, T:A.44, m:F.23, Y:F.25, Y:F.25 Salt bridges: W:D.12, W:R.15, m:R.15, m:R.15 Hydrogen bonds: T:G.28, V:E.94 PC1.106: 17 residues within 4Å: Chain P: A.41, V.42, I.44, W.45 Chain T: G.75, L.76, T.91, I.92, G.141, W.143 Chain k: L.33 Chain o: T.41, L.42, I.45, G.46, R.49, R.53 13 PLIP interactions: 3 interactions with chain P, 5 interactions with chain T, 4 interactions with chain o, 1 interactions with chain k Hydrophobic interactions: P:V.42, P:I.44, P:W.45, T:L.76, T:I.92, T:W.143, T:W.143, o:L.42, o:I.45, k:L.33 Hydrogen bonds: T:L.76, o:R.49 Salt bridges: o:R.53

1 x CDL: CARDIOLIPIN(Non-covalent)

CDL.53: 18 residues within 4Å: Chain 2: V.22, F.25 Chain T: N.200, P.201 Chain U: K.145, H.146, W.149, L.152, W.156, M.159, R.268, I.271, W.272, V.275, L.279 Chain V: F.23, L.27, Y.30 21 PLIP interactions: 15 interactions with chain U, 2 interactions with chain 2, 3 interactions with chain V, 1 interactions with chain T Hydrophobic interactions: U:W.149, U:W.149, U:L.152, U:W.156, U:W.156, U:I.271, U:V.275, U:V.275, U:L.279, U:L.279, 2:V.22, 2:F.25, V:F.23, V:L.27, V:Y.30 Hydrogen bonds: U:K.145, T:N.200 Salt bridges: U:H.146, U:H.146, U:H.146, U:R.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, P. et al., Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex. Nat Commun (2022)

Release Date

2022-05-04

Peptides

Reaction center protein L chain: AT
Reaction center protein M chain: BU
Reaction center protein H chain: CV
Light-harvesting protein B-875 alpha chain: DFHJLNOQWY02468acegikm
Light-harvesting protein B-875 beta chain: EGIKMPRXZ13579bdfhjln
Intrinsic membrane protein PufX: So

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

T
l

B
M

U
m

C
H

V
h

D
A

F
D

H
F

J
I

L
K

N
O

O
7

Q
9

W
a

Y
d

0
f

2
i

4
k

6
o

8
q

a
s

c
u

e
w

g
y

i
5

k
6

m
Q

E
B

G
E

I
G

K
J

M
N

P
8

R
0

X
b

Z
e

1
g

3
j

5
n

7
p

9
r

b
t

d
v

f
x

h
z

j
4

l
aa

n
ab

S
C

o
c

Membrane

We predict this structure to be a membrane protein.
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Reaction center protein L chain

Reaction center protein M chain

Reaction center protein H chain

Light-harvesting protein B-875 alpha chain