- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.12 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 28 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
- 3 x AM2: APRAMYCIN(Non-functional Binders)
AM2.3: 9 residues within 4Å:- Chain A: A.1408, C.1409, G.1491, A.1492, A.1493, G.1494, U.1495, C.1496
- Chain N: A.1913
No protein-ligand interaction detected (PLIP)AM2.4: 8 residues within 4Å:- Chain A: G.818, A.819, U.820, U.855, C.856, C.868, G.869, U.871
No protein-ligand interaction detected (PLIP)AM2.5: 14 residues within 4Å:- Chain A: G.1423, U.1425, G.1426, C.1427, A.1429, A.1430, A.1431, A.1468, C.1469, U.1470, U.1471, U.1472, G.1473, U.1474
No protein-ligand interaction detected (PLIP)- 57 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.6: 3 residues within 4Å:- Chain A: C.576, G.577, C.578
No protein-ligand interaction detected (PLIP)MG.7: 2 residues within 4Å:- Chain A: C.330, C.352
No protein-ligand interaction detected (PLIP)MG.8: 2 residues within 4Å:- Chain A: G.111, G.112
No protein-ligand interaction detected (PLIP)MG.9: 2 residues within 4Å:- Chain A: A.547, G.548
No protein-ligand interaction detected (PLIP)MG.10: 5 residues within 4Å:- Chain A: G.894, G.895, G.903, U.904, U.905
No protein-ligand interaction detected (PLIP)MG.11: 1 residues within 4Å:- Chain A: C.797
No protein-ligand interaction detected (PLIP)MG.12: 2 residues within 4Å:- Chain A: G.361, G.362
No protein-ligand interaction detected (PLIP)MG.13: 1 residues within 4Å:- Chain A: G.731
No protein-ligand interaction detected (PLIP)MG.14: 2 residues within 4Å:- Chain A: U.798, G.800
No protein-ligand interaction detected (PLIP)MG.15: 1 residues within 4Å:- Chain A: G.324
No protein-ligand interaction detected (PLIP)MG.16: 1 residues within 4Å:- Chain A: G.450
No protein-ligand interaction detected (PLIP)MG.17: 1 residues within 4Å:- Chain A: A.768
No protein-ligand interaction detected (PLIP)MG.18: 5 residues within 4Å:- Chain A: U.1498, A.1499, A.1500, G.1504, G.1505
No protein-ligand interaction detected (PLIP)MG.19: 3 residues within 4Å:- Chain A: A.572, A.573, A.574
No protein-ligand interaction detected (PLIP)MG.20: 1 residues within 4Å:- Chain A: A.814
No protein-ligand interaction detected (PLIP)MG.21: 2 residues within 4Å:- Chain A: G.858, G.869
No protein-ligand interaction detected (PLIP)MG.22: 3 residues within 4Å:- Chain A: A.559, A.560, U.562
No protein-ligand interaction detected (PLIP)MG.23: 1 residues within 4Å:- Chain A: C.355
No protein-ligand interaction detected (PLIP)MG.24: 1 residues within 4Å:- Chain A: G.588
No protein-ligand interaction detected (PLIP)MG.25: 1 residues within 4Å:- Ligands: K.1
No protein-ligand interaction detected (PLIP)MG.26: 4 residues within 4Å:- Chain A: G.506, U.508, A.509, A.510
No protein-ligand interaction detected (PLIP)MG.27: 1 residues within 4Å:- Chain A: A.608
No protein-ligand interaction detected (PLIP)MG.28: 3 residues within 4Å:- Chain A: A.116, G.117, G.289
No protein-ligand interaction detected (PLIP)MG.29: 2 residues within 4Å:- Chain A: A.109, G.331
No protein-ligand interaction detected (PLIP)MG.30: 1 residues within 4Å:- Chain A: U.772
No protein-ligand interaction detected (PLIP)MG.31: 1 residues within 4Å:- Chain J: K.69
No protein-ligand interaction detected (PLIP)MG.32: 1 residues within 4Å:- Chain A: A.1433
No protein-ligand interaction detected (PLIP)MG.33: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.34: 1 residues within 4Å:- Chain A: U.20
No protein-ligand interaction detected (PLIP)MG.35: 4 residues within 4Å:- Chain A: A.595, A.596, G.597, U.598
No protein-ligand interaction detected (PLIP)MG.36: 2 residues within 4Å:- Chain A: A.782, A.794
No protein-ligand interaction detected (PLIP)MG.37: 2 residues within 4Å:- Chain A: G.21, A.573
No protein-ligand interaction detected (PLIP)MG.38: 2 residues within 4Å:- Chain A: U.180, A.195
No protein-ligand interaction detected (PLIP)MG.39: 4 residues within 4Å:- Chain A: C.58, A.59, C.386, U.387
No protein-ligand interaction detected (PLIP)MG.40: 2 residues within 4Å:- Chain A: G.64, G.100
No protein-ligand interaction detected (PLIP)MG.41: 2 residues within 4Å:- Chain A: A.174, C.175
No protein-ligand interaction detected (PLIP)MG.42: 5 residues within 4Å:- Chain A: G.297, G.299, G.557, G.558, A.560
No protein-ligand interaction detected (PLIP)MG.43: 1 residues within 4Å:- Chain A: A.572
No protein-ligand interaction detected (PLIP)MG.44: 1 residues within 4Å:- Chain A: C.576
No protein-ligand interaction detected (PLIP)MG.45: 2 residues within 4Å:- Chain A: C.580, C.758
No protein-ligand interaction detected (PLIP)MG.46: 2 residues within 4Å:- Chain A: G.760, G.761
No protein-ligand interaction detected (PLIP)MG.47: 2 residues within 4Å:- Chain A: C.817, G.818
No protein-ligand interaction detected (PLIP)MG.48: 3 residues within 4Å:- Chain A: U.891, A.892, A.906
No protein-ligand interaction detected (PLIP)MG.49: 3 residues within 4Å:- Chain A: G.1416, G.1417, G.1482
No protein-ligand interaction detected (PLIP)MG.50: 5 residues within 4Å:- Chain A: A.1500, G.1505, A.1507, A.1508
- Ligands: K.60
No protein-ligand interaction detected (PLIP)MG.51: 1 residues within 4Å:- Chain A: G.646
No protein-ligand interaction detected (PLIP)MG.52: 1 residues within 4Å:- Chain A: G.727
No protein-ligand interaction detected (PLIP)MG.53: 4 residues within 4Å:- Chain A: G.145, A.197, G.198
- Ligands: K.66
No protein-ligand interaction detected (PLIP)MG.54: 1 residues within 4Å:- Chain A: A.441
No protein-ligand interaction detected (PLIP)MG.55: 2 residues within 4Å:- Chain A: C.569, G.570
No protein-ligand interaction detected (PLIP)MG.56: 2 residues within 4Å:- Chain A: G.1505, U.1506
No protein-ligand interaction detected (PLIP)MG.57: 5 residues within 4Å:- Chain A: G.515, U.516, G.517, A.532, A.533
No protein-ligand interaction detected (PLIP)MG.58: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.59: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.85: 2 residues within 4Å:- Chain A: A.414
- Ligands: K.71
No protein-ligand interaction detected (PLIP)MG.86: 2 residues within 4Å:- Chain A: A.780, G.800
No protein-ligand interaction detected (PLIP)MG.87: 4 residues within 4Å:- Chain A: G.664, G.666, U.740, G.741
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paternoga, H. et al., Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol. (2023)
- Release Date
- 2023-07-26
- Peptides
- Small ribosomal subunit protein uS4: B
Small ribosomal subunit protein uS5: C
Small ribosomal subunit protein bS6, non-modified isoform: D
Small ribosomal subunit protein uS8: E
Small ribosomal subunit protein uS11: F
Small ribosomal subunit protein uS12: G
Small ribosomal subunit protein uS15: H
30S ribosomal protein S16: I
Small ribosomal subunit protein uS17: J
Small ribosomal subunit protein bS18: K
30S ribosomal protein S20: L
Small ribosomal subunit protein bS21: M - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
DC
ED
FE
HF
KG
LH
OI
PJ
QK
RL
TM
U
SMTL ID : 8cgr.1
Apramycin bound to the 30S body
Small ribosomal subunit protein uS4
Small ribosomal subunit protein uS5
Small ribosomal subunit protein bS6, non-modified isoform
Small ribosomal subunit protein uS8
Small ribosomal subunit protein uS11
Small ribosomal subunit protein uS12
Small ribosomal subunit protein uS15
30S ribosomal protein S16
Small ribosomal subunit protein uS17
Small ribosomal subunit protein bS18
30S ribosomal protein S20
Small ribosomal subunit protein bS21
Related Entries With Identical Sequence
2ykr.1 | 3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 4a2i.1 | 4adv.1 | 4pe9.1 | 4pea.1 | 4tol.1 | 4ton.1 | 4tou.1 | 4tow.1 | 4tp0.1 | 4tp2.1 | 4tp4.1 | 4tp6.1 | 4tp8.1 | 4tpa.1 | 4tpc.1 | 4tpe.1 | 4u1u.1 | 4u1u.2 | 4u1v.1 | 4u1v.2 more...less...4u20.1 | 4u20.2 | 4u24.1 | 4u24.2 | 4u25.1 | 4u25.2 | 4u26.1 | 4u26.2 | 4u27.1 | 4u27.2 | 4v4h.1 | 4v4h.2 | 4v4q.1 | 4v4q.2 | 4v50.1 | 4v50.2 | 4v52.1 | 4v52.2 | 4v53.1 | 4v53.2 | 4v54.1 | 4v54.2 | 4v55.1 | 4v55.2 | 4v56.1 | 4v56.2 | 4v57.1 | 4v57.2 | 4v5b.1 | 4v5b.2 | 4v5y.1 | 4v5y.2 | 4v64.1 | 4v64.2 | 4v65.1 | 4v66.1 | 4v6c.1 | 4v6c.2 | 4v6d.1 | 4v6d.2 | 4v6e.1 | 4v6e.2 | 4v6k.1 | 4v6l.1 | 4v6m.1 | 4v6n.1 | 4v6o.1 | 4v6p.1 | 4v6q.1 | 4v6r.1 | 4v6s.1 | 4v6t.1 | 4v6v.1 | 4v6y.1 | 4v6z.1 | 4v70.1 | 4v71.1 | 4v72.1 | 4v73.1 | 4v74.1 | 4v75.1 | 4v76.1 | 4v77.1 | 4v78.1 | 4v79.1 | 4v7a.1 | 4v7b.1 | 4v7c.1 | 4v7d.1 | 4v7i.1 | 4v7s.1 | 4v7t.1 | 4v7u.1 | 4v7u.2 | 4v7v.1 | 4v85.1 | 4v89.1 | 4v9c.1 | 4v9c.2 | 4v9d.1 | 4v9d.2 | 4v9o.1 | 4v9o.2 | 4v9o.3 | 4v9o.4 | 4v9p.1 | 4v9p.2 | 4v9p.3 | 4v9p.4 | 4wao.1 | 4waq.1 | 4waq.2 | 4wf1.1 | 4wf1.2 | 4woi.1 | 4woi.2 | 4www.1 | 4www.2 | 4ybb.1 | 4ybb.2 | 5afi.1 | 5h5u.1 | 5iqr.1 | 5it8.1 | 5it8.2 | 5j5b.1 | 5j5b.2 | 5j7l.1 | 5j7l.2 | 5j88.1 | 5j88.2 | 5j8a.1 | 5j8a.2 | 5j91.1 | 5j91.2 | 5jc9.1 | 5jc9.2 | 5jte.1 | 5ju8.1 | 5kcr.1 | 5kcs.1 | 5kps.1 | 5kpv.1 | 5kpw.1 | 5kpx.1 | 5l3p.1 | 5lza.1 | 5lzb.1 | 5lzc.1 | 5lzd.1 | 5lze.1 | 5lzf.1 | 5mdv.1 | 5mdw.1 | 5mdy.1 | 5mdz.1 | 5me0.1 | 5me1.1 | 5mgp.1 | 5my1.1 | 5no2.1 | 5no3.1 | 5no4.1 | 5np6.1 | 5nwy.1 | 5o2r.1 | 5u4i.1 | 5u4j.1 | 5u9f.1 | 5u9g.1 | 5uyk.1 | 5uyl.1 | 5uym.1 | 5uyn.1 | 5uyp.1 | 5uyq.1 | 5uz4.1 | 5wdt.1 | 5we4.1 | 5we6.1 | 5wf0.1 | 5wfk.1 | 5wfs.1 | 6awb.1 | 6awc.1 | 6awd.1 | 6bu8.1 | 6by1.1 | 6by1.2 | 6c4i.1 | 6dnc.1 | 6enf.1 | 6enj.1 | 6enu.1 | 6gwt.1 | 6gxm.1 | 6gxn.1 | 6gxo.1 | 6gxp.1 | 6h4n.1 | 6h58.44 | 6h58.96 | 6hrm.1 | 6i7v.15 | 6i7v.35 | 6lkq.1 | 6o7k.1 | 6o9j.1 | 6o9k.1 | 6ofx.1 | 6og7.1 | 6ogf.1 | 6ogg.1 | 6ogi.1 | 6om6.1 | 6ore.1 | 6orl.1 | 6osk.1 | 6osq.1 | 6ost.1 | 6ot3.1 | 6ouo.1 | 6q98.1 | 6q9a.1 | 6szs.1 | 6tbv.1 | 6tc3.1 | 6vwl.1 | 6vwm.1 | 6vwn.1 | 6vyx.12 | 6vyx.13 | 6vyx.14 | 6vyx.18 | 6vyx.19 | 6vyx.22 | 6vyx.28 | 6vyx.29 | 6vyx.30 | 6vz3.29 | 6vzj.11 | 6vzj.12 | 6vzj.13 | 6vzj.18 | 6vzj.27 | 6vzj.28 | 6vzj.29 | 6w6k.1 | 6w77.1 | 6w7m.1 | 6w7n.1 | 6w7w.1 | 6wd0.1 | 6wd1.1 | 6wd2.1 | 6wd3.1 | 6wd4.1 | 6wd5.1 | 6wd6.1 | 6wd7.1 | 6wd8.1 | 6wd9.1 | 6wda.1 | 6wdb.1 | 6wdc.1 | 6wdd.1 | 6wde.1 | 6wdf.1 | 6wdg.1 | 6wdh.1 | 6wdi.1 | 6wdj.1 | 6wdk.1 | 6wdl.1 | 6wdm.1 | 6wnv.1 | 6wnw.1 | 6xdq.14 | 6xdq.15 | 6xdq.16 | 6xdq.20 | 6xdq.21 | 6xdq.24 | 6xdq.30 | 6xdq.31 | 6xdq.32 | 6xe0.1 | 6xza.1 | 6xzb.1 | 6y69.1 | 6ysr.1 | 6yss.1 | 6yst.1 | 6ysu.1 | 6ztj.3 | 6ztj.7 | 6ztj.11 | 6ztj.14 | 6ztj.15 | 6ztj.16 | 6ztj.17 | 6ztj.19 | 6ztj.20 | 6ztl.1 | 6ztm.1 | 6ztn.3 | 6ztn.7 | 6ztn.11 | 6ztn.14 | 6ztn.15 | 6ztn.16 | 6ztn.17 | 6ztn.19 | 6ztn.20 | 6zto.1 | 6ztp.1 | 6zu1.1 | 7abz.1 | 7acj.1 | 7acr.1 | 7afi.1 | 7afl.1 | 7afo.1 | 7b5k.1 | 7bod.1 | 7boe.1 | 7bof.1 | 7bog.1 | 7boh.1 | 7boi.1 | 7cpj.1 | 7d6z.1 | 7d80.1 | 7jss.1 | 7jsw.1 | 7jsz.1 | 7jt1.1 | 7jt2.1 | 7jt3.1 | 7k00.1 | 7k50.1 | 7k51.1 | 7k52.1 | 7k53.1 | 7k54.1 | 7k55.1 | 7lv0.1 | 7m5d.1 | 7n1p.1 | 7n2c.1 | 7n2u.1 | 7n2v.1 | 7n30.1 | 7n31.1 | 7nar.1 | 7nas.1 | 7nat.1 | 7nau.1 | 7nav.1 | 7nax.1 | 7nso.1 | 7nsp.1 | 7nsq.1 | 7nwt.1 | 7nww.1 | 7o19.1 | 7o1a.1 | 7o1c.1 | 7o5h.1 | 7oe0.1 | 7oe1.1 | 7oi0.1 | 7oif.1 | 7oig.1 | 7oii.1 | 7oiz.1 | 7oj0.1 | 7ot5.1 | 7otc.1 | 7p3k.1 | 7pjs.1 | 7pjt.1 | 7pju.1 | 7pjv.1 | 7pjw.1 | 7pjx.1 | 7pjy.1 | 7pjz.1 | 7q4k.1 | 7qg8.1 | 7qgh.1 | 7qgn.1 | 7qgr.1 | 7s1g.1 | 7s1h.1 | 7s1i.1 | 7s1j.1 | 7s1k.1 | 7sa4.1 | 7ss9.1 | 7ssd.1 | 7ssl.1 | 7ssn.1 | 7sso.1 | 7ssw.1 | 7st2.1 | 7st6.1 | 7st7.1 | 7tos.1 | 7ug7.1 | 7uph.1 | 7y7c.1 | 7y7d.1 | 7y7e.1 | 7y7f.1 | 7y7g.1 | 7y7h.1 | 7zta.1 | 8a3l.1 | 8akn.1 | 8am9.1 | 8aye.1 | 8b0x.1 | 8b7y.1 | 8bd5.1 | 8bf7.1 | 8bge.1 | 8bgh.1 | 8bh4.1 | 8bhj.1 | 8bhl.1 | 8bhn.1 | 8bhp.1 | 8bil.1 | 8bim.1 | 8ca7.1 | 8cai.1 | 8cep.1 | 8cf1.1 | 8cgj.1 | 8cgu.1 | 8ea3.1 | 8ea4.1 | 8eiu.1 | 8ekc.1 | 8emm.1 | 8eyq.1 | 8eyt.1 | 8fiz.1 | 8fto.1 | 8fzd.1 | 8fze.1 | 8fzf.1 | 8fzg.1 | 8fzh.1 | 8fzi.1 | 8fzj.1 | 8g2u.1 | 8g31.1 | 8g34.1 | 8g38.1 | 8g6w.1 | 8g7p.1 | 8g7q.1 | 8g7r.1 | 8g7s.1 | 8ghu.1 | 8hsp.1 | 8htz.1 | 8hu1.1 | 8ifb.1 | 8ifc.1 | 8jsg.1 | 8jsh.1 | 8k3o.1 | 8k4e.1 | 8p16.1 | 8p17.1 | 8p18.1 | 8peg.1 | 8phj.1 | 8pkl.1 | 8pva.1 | 8q4f.1 | 8qbt.1 | 8qk7.1 | 8qoa.1 | 8r6c.1 | 8r8m.1 | 8rcm.9 | 8rcm.10 | 8rcm.11 | 8rcm.12 | 8rcm.17 | 8rcm.18 | 8rcm.31 | 8rcm.32 | 8rcm.33 | 8rcm.34 | 8rcm.35 | 8rcm.36 | 8rcm.37 | 8rcm.40 | 8rcm.41 | 8rcm.42 | 8rct.9 | 8rct.10 | 8rct.11 | 8rct.12 | 8rct.17 | 8rct.18 | 8rct.31 | 8rct.32 | 8rct.33 | 8rct.34 | 8rct.35 | 8rct.36 | 8rct.37 | 8rct.40 | 8rct.41 | 8rct.42 | 8syl.1 | 8t5d.1 | 8t5h.1 | 8urx.13 | 8urx.14 | 8urx.15 | 8urx.19 | 8urx.20 | 8urx.23 | 8urx.29 | 8urx.30 | 8urx.31 | 8vs9.1 | 8vsa.1 | 8yuo.1 | 8yup.1 | 8yuq.1 | 8yur.1 | 8yus.1 | 9ax7.1 | 9ax8.1 | 9cg5.1 | 9cg6.1 | 9cg7.1 | 9fbv.1