SMTL ID : 8rqi.1

Structure of Rhizobium NopD with ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.1: 7 residues within 4Å: Chain A: W.66, S.145, Q.195, S.198, Y.199, C.201 Chain B: G.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Broad-spectrum ubiquitin/ubiquitin-like deconjugation activity of the rhizobial effector NopD from Bradyrhizobium (sp. XS1150). Commun Biol (2024)

Release Date

2024-11-20

Peptides

NopD: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NopD

Polyubiquitin-B

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