- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.57 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)(Covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.5: 4 residues within 4Å:- Chain A: W.11
- Chain C: P.199, A.206
- Ligands: BCL.1
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:P.199, C:A.206, A:W.11, A:W.11
LDA.6: 5 residues within 4Å:- Chain C: F.6, S.7, L.37, W.40, F.41
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.6, C:L.37, C:W.40, C:F.41
- pi-Cation interactions: C:W.40
LDA.7: 7 residues within 4Å:- Chain B: V.220, G.221
- Chain C: S.29, G.30, G.32, G.47, I.49
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.30
- 1 x FE: FE (III) ION(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)(Covalent)
BPH.9: 21 residues within 4Å:- Chain B: F.181, A.184, L.185, A.188, L.189, V.220
- Chain C: G.62, L.63, F.66, A.124, V.125, W.128, T.145, A.148, F.149, A.152, A.272, V.273, T.276
- Ligands: BCL.4, BCL.13
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:L.63, C:F.66, C:W.128, C:A.148, C:F.149, C:A.152, C:A.272, C:T.276, B:F.181, B:A.184, B:A.188, B:L.189
BPH.12: 26 residues within 4Å:- Chain B: T.38, F.41, A.42, I.49, I.89, C.92, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, A.124, Y.148, L.238, V.241
- Chain C: X.209, A.212, L.213, A.216, M.217, M.255
- Ligands: BCL.1, BCL.2
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:A.42, B:I.49, B:I.89, B:A.93, B:A.120, B:F.121, B:F.121, B:A.124, B:Y.148, B:Y.148, B:L.238, B:V.241, C:A.212, C:A.216
- Hydrogen bonds: B:E.104
- 1 x SPO: SPHEROIDENE(Covalent)
SPO.10: 16 residues within 4Å:- Chain C: F.66, F.67, I.69, G.70, W.74, F.84, S.118, F.119, W.156, L.159, G.160, F.161, V.174, G.177, H.181
- Ligands: BCL.13
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:F.66, C:F.66, C:F.66, C:F.67, C:I.69, C:F.119, C:W.156, C:L.159, C:V.174, C:V.174
- 1 x CDL: CARDIOLIPIN(Covalent)
CDL.11: 20 residues within 4Å:- Chain A: A.6, S.9, F.10, F.13, G.16, L.17, Y.20
- Chain B: N.199, P.200
- Chain C: W.129, G.142, K.143, H.144, W.147, L.150, R.266, I.269, W.270, V.273, L.277
19 PLIP interactions:13 interactions with chain C, 4 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: C:W.129, C:W.147, C:L.150, C:W.270, C:W.270, C:V.273, C:L.277, C:L.277, A:F.10, A:F.13, A:L.17, A:Y.20
- Hydrogen bonds: C:K.143, B:N.199, B:P.200
- Salt bridges: C:H.144, C:H.144, C:H.144, C:R.266
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tran, K. et al., Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine. To Be Published
- Release Date
- 2024-03-13
- Peptides
- Reaction center protein H chain: A
Reaction center protein L chain: B
Reaction center protein M chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8vtn.1
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine
Reaction center protein H chain
Reaction center protein L chain
Reaction center protein M chain
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1k6l.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 | 1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1umx.1 more...less...1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gnu.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 3i4d.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in6.1 | 4n7k.1 | 4n7l.1 | 4rcr.1 | 4tqq.1 | 5v33.1 | 7pil.1 | 7pqd.30 | 7pqd.65 | 8vtj.1 | 8vtk.1 | 8vtl.1 | 8vtm.1 | 8vto.1