SMTL ID : 8y45.1

Cryo-EM structure of opioid receptor with biased agonist

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 01: ~{N},~{N}-diethyl-4-(5-oxidanylspiro[chromene-2,4'-piperidine]-4-yl)benzamide

01.1: 8 residues within 4Å: Chain A: D.101, Y.102, M.105, K.187, W.257, L.273, I.277, Y.281 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.102, A:W.257, A:L.273, A:I.277, A:Y.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, L. et al., Cryo-EM structure of small-molecule agonist bound delta opioid receptor-G i complex enables discovery of biased compound. Nat Commun (2024)

Release Date

2024-11-27

Peptides

Delta-type opioid receptor: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(i) subunit alpha-2: C
scFv16: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
S

E
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Delta-type opioid receptor

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(i) subunit alpha-2

scFv16

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Related Entries With Identical Sequence