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SMTL ID : 9fpu.1

Crystal structure of carbonic anhydrase II with N-butyl-4-chloro-3-sulfamoyl-benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 01.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 01: ~{N}-butyl-4-chloranyl-3-sulfamoyl-benzamide

01.2:

16 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, H.96, H.119, V.121, L.140, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:H.64, A:A.65, A:T.199
Hydrogen bonds: A:N.67, A:Q.92, A:T.198, A:T.198, A:T.199, A:T.199
Water bridges: A:N.62, A:N.62

1 x NA: SODIUM ION(Non-functional Binders)

NA.3:

2 residues within 4Å:

Chain A: S.219, E.220

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:S.219, A:E.220

1 x BCN: BICINE(Non-covalent)

BCN.4:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:K.148, A:K.148
Water bridges: A:Y.114

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Smirnov, A. et al., Crystal structure of carbonic anhydrase II with N-butyl-4-chloro-3-sulfamoyl-benzamide. To Be Published

Release Date

2025-06-25

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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