SMTL ID : 9gmr.1

SIRT7-H3K36MTUnucleosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.80 Å

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x 01: [[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2-(methylamino)-6-oxidanyl-2-(propylamino)-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate

01.1: 18 residues within 4Å: Chain A: K.37 Chain K: G.108, A.109, G.110, T.113, D.119, Y.120, H.188, V.238, F.240, S.270, S.271, K.273, V.274, N.298, L.299, Q.300, C.316 11 PLIP interactions: 10 interactions with chain K, 1 interactions with chain A Hydrophobic interactions: K:F.240, A:K.37 Hydrogen bonds: K:A.109, K:Y.120, K:H.188, K:V.238, K:S.271, K:S.271, K:N.298, K:L.299 Salt bridges: K:K.273

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain K: C.196, S.198, C.199, C.229 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.196, K:S.198, K:C.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carlos, M.Y. et al., Structural basis of SIRT7 nucleosome engagementand substrate specificity. To Be Published

Release Date

2025-01-29

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 2-A: CG
Histone H2B type 1-J: DH
NAD-dependent protein deacetylase sirtuin-7: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

Histone H3.2

Histone H4

Histone H2A type 2-A

Histone H2B type 1-J

NAD-dependent protein deacetylase sirtuin-7

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