A0A386IRL6 (A0A386IRL6_STAAU) Staphylococcus aureus
CRISPR-associated endonuclease Cas9 UniProtKBInterProInteractive Modelling
1368 aa; Sequence (Fasta) ;
2 identical sequences: Chlamydomonas reinhardtii: A0A4P8PLM4; Streptococcus pyogenes serotype M1: Q99ZW2
Available Structures
107 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex |
Heteromer A0A0E0UT28; Q99ZW2; | 99.85 | 2×PEG; 2×PG4; 1×EDO; 1×MG; | |||
| Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex |
Heteromer Q99ZW2; | 100.0 | ||||
| Cryo-EM structure of Cas9-sgRNA-A32 complex |
Heteromer Q99ZW2; | 100.0 | ||||
| Cryo-EM structure of Cas9-sgRNA-A25 complex |
Heteromer Q99ZW2; | 100.0 | ||||
| Structure of nuclease in complex with associated protein |
Heteromer A0A247D711; Q99ZW2; | 100.0 | ||||
| cryo-EM structure of the Cas9-sgRNA-AcrIIA4 anti-CRISPR complex |
Heteromer A0A2D0TCG7; Q99ZW2; | 99.93 | ||||
| SpCas9-MMLV RT-pegRNA-target DNA complex (termination) |
Heteromer Q8UN00; Q99ZW2; | 99.85 | ||||
| SpCas9-MMLV RT-pegRNA-target DNA complex (initiation) |
Heteromer Q8UN00; Q99ZW2; | 99.85 | ||||
| SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt) |
Heteromer Q8UN00; Q99ZW2; | 99.85 | ||||
| SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt) |
Heteromer Q8UN00; Q99ZW2; | 99.85 | ||||
| Structure of the SpCas9 DNA adenine base editor - ABE8e |
Heteromer P68398; Q99ZW2; | 99.85 | 3×MG; 2×ZN; | |||
| SpRYmer bound to NAC PAM DNA | homo-2-mer | 99.16 | 5×MG; | |||
| Cryo-EM structure of spyCas9-sgRNA-DNA dimer | homo-2-mer | 100.0 | ||||
| Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex | monomer | 99.85 | 3×MG; | |||
| Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate | monomer | 99.84 | 10×K; | |||
| Crystal structure of SpyCas9 in complex with sgRNA and target RNA | monomer | 99.85 | ||||
| SpCas9 bound to 10-nucleotide complementary DNA substrate | monomer | 99.85 | ||||
| SpCas9 bound to TRAC off-target1 DNA substrate | monomer | 99.85 | 2×MG; 17×K; | |||
| SpCas9 bound to FANCF off-target1 DNA substrate | monomer | 99.85 | 2×MG; 10×K; | |||
| Nuclease-inactive Streptococcus pyogenes Cas9 (D10A/H840A, dCas9) in complex with single-guide RNA … | monomer | 99.78 | ||||
| Target-bound SpCas9 complex with AAVS1 chimeric RNA-DNA guide | monomer | 99.85 | 2×MG; 14×K; | |||
| SpCas9 bound to FANCF on-target DNA substrate | monomer | 99.85 | 2×MG; 10×K; | |||
| SpCas9 bound to FANCF off-target2 DNA substrate | monomer | 99.85 | 2×MG; 13×K; | |||
| Target-bound SpCas9 complex with AAVS1 all-RNA guide | monomer | 99.85 | 2×MG; 11×K; | |||
| SpCas9 bound to TRAC off-target2 DNA substrate | monomer | 99.85 | 2×MG; 14×K; | |||
| SpCas9 bound to AAVS1 off-target4 DNA substrate | monomer | 99.85 | 2×MG; 13×K; 1×EDO; | |||
| Crystal structure of xCas9 in complex with sgRNA and DNA (CGG PAM) | monomer | 99.17 | 9×PO4; | |||
| SpCas9 bound to PTPRC off-target1 DNA substrate | monomer | 99.85 | 2×MG; 10×K; | |||
| Crystal structure of xCas9 in complex with sgRNA and DNA (TGG PAM) | monomer | 99.17 | 5×PO4; | |||
| SpCas9 bound to AAVS1 off-target1 DNA substrate | monomer | 99.85 | 2×MG; 12×K; | |||
| SpCas9 bound to FANCF off-target4 DNA substrate | monomer | 99.85 | 2×MG; 10×K; | |||
| Crystal structure of xCas9 in complex with sgRNA and DNA (TGA PAM) | monomer | 99.31 | ||||
| SpCas9 bound to 8-nucleotide complementary DNA substrate | monomer | 99.85 | ||||
| SpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic state | monomer | 100.0 | 4×MG; | |||
| SpCas9 bound to 12-nucleotide complementary DNA substrate | monomer | 99.92 | ||||
| SpCas9 bound to 14-nucleotide complementary DNA substrate | monomer | 99.85 | ||||
| SpCas9 bound to 6 nucleotide complementary DNA substrate | monomer | 99.85 | ||||
| Crystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target … | monomer | 99.4 | 10×K; 3×MG; 5×EDO; 1×ACT; | |||
| SpCas9 bound to FANCF off-target3 DNA substrate | monomer | 99.85 | 2×MG; 10×K; | |||
| SpCas9 bound to FANCF off-target7 DNA substrate | monomer | 99.85 | 2×MG; 11×K; | |||
| SpCas9 bound to FANCF off-target5 DNA substrate | monomer | 99.85 | 2×MG; 9×K; | |||
| SpCas9 bound to CD34 off-target9 DNA substrate | monomer | 99.91 | 2×MG; 8×K; | |||
| Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA | monomer | 99.69 | ||||
| SpCas9 bound to AAVS1 off-target3 DNA substrate | monomer | 99.85 | 2×MG; 10×K; 4×EDO; | |||
| Target-bound SpCas9 complex with TRAC chimeric RNA-DNA guide | monomer | 99.85 | 2×MG; 14×K; | |||
| Crystal structure of SpCas9-NG | monomer | 99.39 | 10×K; 3×MG; 3×EDO; | |||
| Target-bound SpCas9 complex with TRAC full RNA guide | monomer | 99.85 | 2×MG; 12×K; | |||
| SpCas9 bound to AAVS1 off-target5 DNA substrate | monomer | 99.85 | 2×MG; 13×K; 5×EDO; | |||
| Crystal structure of catalytically-active Streptococcus pyogenes Cas9 in complex with single-guide … | monomer | 99.93 | ||||
| Crystal structure of xCas9 P411T | monomer | 99.45 | ||||
| SpCas9 bound to AAVS1 off-target2 DNA substrate | monomer | 99.85 | 2×MG; 13×K; | |||
| SpCas9 bound to FANCF off-target6 DNA substrate | monomer | 99.85 | 2×MG; 11×K; 1×EDO; | |||
| SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop | monomer | 99.04 | ||||
| SpRY-Cas9:gRNA complex targeting TTC PAM DNA | monomer | 99.18 | 4×MG; | |||
| SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop | monomer | 98.93 | ||||
| SpRY-Cas9:gRNA complex targeting TGG PAM DNA | monomer | 99.18 | 4×MG; | |||
| SpRY-Cas9:gRNA complex targeting TAC PAM DNA | monomer | 99.18 | 4×MG; | |||
| SpCas9-pegRNA-target DNA complex (pre-initiation) | monomer | 99.85 | ||||
| Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | monomer | 100.0 | ||||
| Cas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformation | monomer | 100.0 | 5×MG; | |||
| Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | monomer | 100.0 | ||||
| Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium | monomer | 100.0 | ||||
| SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop | monomer | 98.99 | ||||
| SpCas9 bound to 18-nucleotide complementary DNA substrate in the checkpoint state | monomer | 100.0 | 1×MG; 2×K; | |||
| SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop | monomer | 99.01 | ||||
| SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop | monomer | 99.06 | ||||
| Cas9 bound to 12-14MM DNA, 60 min time-point, kinked conformation | monomer | 100.0 | ||||
| SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop | monomer | 99.14 | 3×MG; | |||
| SpG Cas9 with NGG PAM DNA target | monomer | 99.55 | 5×MG; | |||
| SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop | monomer | 99.04 | ||||
| Cas9:sgRNA (S. pyogenes) in the open-protein conformation | monomer | 100.0 | ||||
| SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop | monomer | 98.86 | ||||
| Cryo-EM structure of Cas9 in complex with 12-14MM DNA substrate, 5 minute time-point | monomer | 100.0 | ||||
| SpG Cas9 with NGC PAM DNA target | monomer | 99.55 | 5×MG; | |||
| SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop | monomer | 98.72 | ||||
| SpCas9 bound to 16-nucleotide complementary DNA substrate | monomer | 99.85 | 2×K; | |||
| Crystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target D… | monomer | 99.47 | 11×K; 3×MG; 4×EDO; 1×ACT; | |||
| Crystal structure of the Streptococcus pyogenes Cas9 EQR variant in complex with sgRNA and target D… | monomer | 99.47 | 11×K; 3×MG; 4×EDO; 1×ACT; | |||
| Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | monomer | 99.62 | 2×MG; 10×K; | |||
| Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | monomer | 99.55 | 2×MG; 11×K; | |||
| Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM) | monomer | 99.32 | ||||
| Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | monomer | 99.32 | ||||
| Crystal structure of xCas9 in complex with sgRNA and DNA (TGC PAM) | monomer | 99.16 | ||||
| Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single… | monomer | 100 | 3×SO4; | |||
| Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation | monomer | 99.93 | ||||
| Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation | monomer | 99.9 | ||||
| SpCas9 with dual-guide RNA and target DNA | monomer | 100.0 | ||||
| Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop | monomer | 99.93 | ||||
| SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop | monomer | 99.03 | ||||
| Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | monomer | 99.85 | 2×MG; 13×K; | |||
| Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | monomer | 99.85 | 8×MG; | |||
| Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | monomer | 99.85 | 8×MG; | |||
| Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | monomer | 99.62 | 13×K; 2×MG; | |||
| Crystal structure of Cas9 bound to PAM-containing DNA target | monomer | 99.92 | 8×MG; | |||
| Crystal structure of dCas9 in complex with sgRNA and DNA (CGA PAM) | monomer | 99.85 | ||||
| Crystal structure of SpyCas9 in complex with sgRNA and 17nt target DNA | monomer | 99.85 | 1×SO4; | |||
| Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM) | monomer | 99.85 | ||||
| Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 18nt target DNA | monomer | 99.85 | ||||
| Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA | monomer | 99.85 | ||||
| Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 17nt target DNA | monomer | 99.85 | ||||
| Crystal structure of SpyCas9 in complex with sgRNA and 18nt target DNA | monomer | 99.85 | 1×SO4; | |||
| Crystal structure of SpyCas9 in complex with sgRNA and 16nt target DNA | monomer | 99.85 | ||||
| SpCas9 with sgRNA and target DNA | monomer | 100.0 | ||||
| Crystal structure of S. pyogenes Cas9 | monomer | 100.0 | 2×SO4; | |||
| Crystal structure of Mn-bound S.pyogenes Cas9 | monomer | 100.0 | 7×MN; 3×SO4; | |||
| Rec3 Domain from S. pyogenes Cas9 | monomer | 100 | 5×EDO; | |||
| HNH Nuclease from S. pyogenes Cas9 | monomer | 100 | ||||
4 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6ifo.1.A | monomer | 0.85 | 100.00 | |||
| 7s4x.1.A | monomer | 0.82 | 100.00 | |||
| 8g1i.1.B | monomer | 0.72 | 100.00 | |||
| 7s37.1.A | monomer | 0.61 | 100.00 | |||