O15530 (PDPK1_HUMAN) Homo sapiens (Human)

3-phosphoinositide-dependent protein kinase 1 UniProtKBInterProSTRINGInteractive Modelling

556 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5)

Available Structures

70 Experimental Structures

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
Crystal structure of PDK1 in complex with ATP and PIFtide Heteromer
Q16513;
76-359
99.3ATP;GOL;
Crystal structure of WDR5 in complex with the WIN peptide of PDPK1 Heteromer
P61964;
2-11
100
High resolution crystal structure of the human PDK1 catalytic domainhomo-2-mer71-359
100.016×GOL; 10×SO4;ATP;
Crystal structure of PDK1 in complex with a pyrazoloquinazoline inhibitorhomo-2-mer73-359
100.0CKG; 12×GOL; 12×SO4;
Crystal structure of PDK1 in complex with a pyrazoloquinazoline inhibitorhomo-2-mer76-359
99.64MH4;GOL;SO4;
Human PDK1 Kinase Domain in Complex with Allosteric Compound PS210 Bound to the PIF-Pocketmonomer66-359
99.3ATP;21O;DMS;MN;NA;CL;
Human PDK1 kinase domain in complex with Valsartanmonomer70-359
99.31U35;GOL;
Crystal structure of PDK1 in complex with ATP and the PIF-pocket ligand RF4monomer71-359
99.31ATP;RF4;GOL;
Crystal structure of PDK1 in complex with ATP and the PIF-pocket ligand RS2monomer71-359
99.31GOL;ATP;R2S;
Structure of human PDK1 kinase domain in complex with staurosporinemonomer72-360
100.0GOL;SO4;STU;
Structure of human PDK1 kinase domain in complex with BIM-8monomer71-359
100.0GOL;SO4;BI8;
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORSmonomer71-359
100.063L;SO4;
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORSmonomer71-359
100.0SO4;62O;
Crystal structure of an extender (SPD28345)-modified human PDK1 complex 2monomer71-359
99.29SYP;
Structure of human PDK1 kinase domain in complex with LY333531monomer73-360
100.0GOL;SO4;LY4;
Structure of PDK1-S241A mutant kinase domainmonomer72-359
99.65GOL;SO4;ATP;
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 1,1-Dimethylethyl {(3R,6S)-1-[2-amino…monomer71-358
100.03Q5;SO4;GOL;
phosphoinositide-dependent kinase-1 (PDK1) with lead compoundmonomer71-358
100.0GOL;SO4;JMZ;
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 1,1-Dimethylethyl{(3R,5R)-1-[2-amino-…monomer71-358
100.03Q6;SO4;
Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1)monomer72-359
100.03RW;GOL;SO4;
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORSmonomer71-358
100.063E;SO4;
Human PDK1 Kinase Domain in Complex with Allosteric Compound PSE10 Bound to the PIF-Pocketmonomer73-359
99.3ATP;78W;DMS;DTD;CL;
Human PDK1 Kinase Domain in Complex with Allosteric Compound 7 Bound to the PIF-Pocketmonomer73-359
99.3ATP;SVQ;DTD;DMS;NA;
Structure of human PDK1 kinase domain in complex with BIM-2monomer73-359
100.0GOL;BI2;SO4;
Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1)monomer73-359
100.0GOL;SO4;ABQ;
Structure of human PDK1 kinase domain in complex with BIM-1monomer72-358
100.0GOL;SO4;BI1;
Structure of human PDK1 kinase domain in complex with UCN-01monomer73-359
100.0GOL;SO4;UCN;
PDK1 in complex with inhibitor MP6monomer76-362
100.0MP6;
Novel Isoquinolone PDK1 Inhibitors Discovered through Fragment-Based Lead Discoverymonomer73-359
100.03S1;SO4;GOL;
Human PDK1 Kinase Domain in Complex with Compound PS653 Bound to the ATP-Binding Sitemonomer74-359
99.3537;DTD;DMS;
Crystal structure of PDK1 in complex with ATP and the PIF-pocket ligand RS1monomer74-359
99.3GOL;ATP;R1S;EPE;
Structure of human PDK1 kinase domain in complex with BIM-3monomer72-357
100.0GOL;SO4;BI3;
phosphoinositide-dependent kinase-1 (PDK1) with fragment11monomer73-358
100.0GOL; 10×SO4;JOZ;
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with (2R,5S)-1-[2-Amino-6-(3-amino-1H-inda…monomer73-358
100.0GOL;SO4;3Q4;
PDK1 mutant bound to allosteric disulfide fragment activator 2A2monomer74-359
99.642A2;BI4;
phosphoinositide-dependent kinase-1 (PDK1) with fragment17monomer73-358
100.0GOL;SO4;JPZ;
CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 3-{5-[2-Oxo-5-ureido-…monomer74-359
100.0SO4;464;GOL;
CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) {2-Oxo-3-[1-(1H-pyrro…monomer74-359
100.0SO4;517;GOL;
Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)amino]phenyl]amino]-4-pyrimidin…monomer74-359
100.0SO4;CL;LI8;GOL;
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 4-[2-Amino-6-(3-amino-1H-indazol-6-yl…monomer73-358
100.0GOL;SO4;3Q3;
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-{2-Amino-6-[(3R)-3-methyl-4-morphol…monomer73-358
100.0GOL;SO4;3Q2;
CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 5-Hydroxy-3-[1-(1H-py…monomer74-359
100.0SO4;39Z;GOL;
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-[2-Amino-6-(4-morpholinyl)-4-pyrimi…monomer73-358
100.0GOL;SO4;3Q1;
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-(3-Amino-1H-indazol-6-yl)-N4-ethyl-…monomer73-358
100.0GOL;SO4;3Q0;
phosphoinositide-dependent kinase-1 (PDK1) with fragment8monomer73-358
100.0GOL;JNZ;SO4;
Human PDK1-PKCzeta Kinase Chimeramonomer75-359
96.79ATP;DTD;NA;
Human PDK1 Kinase Domain in Complex with Adenosine Bound to the ATP-Binding Sitemonomer75-359
99.3DTD;ADN;CL;
Human PDK1 Kinase Domain in Complex with Allosteric Compound PS182 Bound to the PIF-Pocketmonomer75-359
99.3ATP;MJF;DMS;MG;DTD;
PDK1 in complex with inhibitor MP7monomer76-360
100.0MP7;
Human PDK1 Kinase Domain in Complex with Allosteric Activator PS171 Bound to the PIF-Pocketmonomer75-359
99.3ATP;AZ7;MG;CL;
Crystal structure of Human PDK1 kinase domain in complex with an allosteric activator bound to the …monomer75-359
99.3ATP;P47;EPE;
Human PDK1 Kinase Domain in Complex with Allosteric Activator PS114 Bound to the PIF-Pocketmonomer75-359
99.3ATP;A06;DMS;CL;
PDK-1 in complex with the inhibitor Compound-8imonomer75-359
100.08I1;
PDK1 mutant bound to allosteric disulfide fragment inhibitor 1F8monomer75-359
99.651F8;CL;
Phosphoinositide-dependent protein kinase 1 (PDK-1) in complex with compound 9monomer75-359
100.09BD;
PDK1 in complex with Compound 8hmonomer75-359
100.08H1;SO4;
Human PDK1 Kinase Domain in Complex with an HM-Peptide Bound to the PIF-Pocketmonomer75-359
99.28ATP;
Crystal Structure of the Phosphoinositide-dependent Kinase-1 (PDK-1)Catalytic Domain bound to a dib…monomer75-359
100.0SO4;253;
Human PDK1 Kinase Domain in Complex with Adenine Bound to the ATP-Binding Sitemonomer76-359
99.3ADE;DTD;
Human PDK1-PKCiota Kinase Chimera in Complex with Allosteric Compound PS267 Bound to the PIF-Pocketmonomer76-359
96.48S26;DTT;DMS;ATP;
PDK1 in complex with DFG-OUT inhibitor xxxmonomer76-359
99.28MP7;
Human PDK1-PKCzeta Kinase Chimera in Complex with Allosteric Compound PS315 Bound to the PIF-Pocketmonomer76-359
96.48ATP;31S;DMS;DTD;
Crystal structure of a mutant of human PDK1 Kinase domain in complex with ATPmonomer76-359
99.29ATP;
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORSmonomer76-358
100.0SO4;61Y;
PDK1 mutant bound to allosteric disulfide fragment activator JS30monomer77-359
99.64J30;BI4;SO4;CL;
Rapid preparation of triazolyl substituted NH-heterocyclic kinase inhibitors via one-pot Sonogashir…monomer77-358
99.293RC;
Crystal Structure of the PDK1 Pleckstrin Homology (PH) domainmonomer410-556
100GOL;SO4;
Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain bound to DiC4-phosphatidylinositol (3…monomer409-550
1004PT;
Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain bound to Inositol (1,3,4,5)-tetrakisp…monomer409-550
100GOL;AU;4IP;
Structure of the PDK1 PH domain K465E mutantmonomer410-549
99.29GOL;SO4;

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
3rwq.2.Bmonomer0.8572-359
3RW;100.00
4mvf.1.Amonomer0.5470-423
33.15

8 SWISS-MODEL models built on isoform sequence

IsoformTemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
Isoform 22biy.1.Amonomer0.8622-308
ATP;99.68
Isoform 24mvf.1.Amonomer0.5420-373
33.24
Isoform 35ho7.1.Amonomer0.8471-333
63L;100.00
Isoform 34mvf.1.Amonomer0.5670-397
32.84
Isoform 41w1h.2.Amonomer0.82282-429
100.00
Isoform 43rwq.2.Bmonomer0.7178-232
81.94
Isoform 52biy.1.Amonomer0.8772-358
ATP;99.68
Isoform 54mvf.1.Amonomer0.5370-423
33.15