P11172 | SWISS-MODEL Repository

P11172 (UMPS_HUMAN) Homo sapiens (Human)

Uridine 5'-monophosphate synthase UniProtKB InterPro STRING Interactive Modelling

480 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4); 1 identical sequence: Homo sapiens: A8K5J1

It is possible new templates exist for this target since these models were created.

Available Structures

62 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro…	3g3d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	221-479	100	2×5FU; 3×GOL; 1×SO4;
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Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase)	2p1f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	221-479	100	2×SO4; 2×NA; 8×GOL;
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Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with 5-fluoro-UMP(pro…	3mw7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	221-479	100	2×5FU;
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Crystal structure of human orotidine 5'-monophosphate decarboxylase covalently modified by 2'-fluor…	3mo7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-480	100	2×UFT; 2×GOL;
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Orotidine 5'-monophosphate decarboxylase-domain of human UMPS in resting state at 0.95 Angstrom res…	7ov0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-480	100	4×GOL; 2×SO4; 6×PRO;
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Crystal structure of human orotidine-5'-monophosphate decarboxylase complexed with pyrazofurin mono…	3mi2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-479	100	2×PFU;
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Variant D312N of Orotidine 5'-monophosphate decarboxylase-domain of human UMPS in complex with the …	7q1h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-480	99.61	2×OMP; 2×SO4; 2×PRO;
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human orotidyl-5'-monophosphate decarboxylase in complex with 5-cyano-UMP	3ewz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-480	100	1×SO4; 4×CNU;
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Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro…	3g3m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-479	100	2×5FU;
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Crystal Structure of Human Orotidine 5'-Monophosphate Decarboxylase Complexed with 6-NH2-UMP	3dbp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-479	100	2×SO4; 2×NUP;
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Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with 5-CN-UMP	3bk0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-479	100	2×SO4; 2×CNU; 2×GOL;
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Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with XMP	3bvj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-479	100	2×SO4; 2×XMP; 1×GOL;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase, apo…	2qcc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-480	100.0	2×SO4; 2×GOL;
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Crystal structure of Human Orotidine 5'-monophosphate Decarboxylase complexed with BMP	3bgg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-479	100	2×BMP;
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Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 6-iodo-U…	3bgj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	223-479	100	2×U5P; 1×GOL;
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Human OMPD-domain of UMPS in complex with 6-hydroxy-UMP at 0.9 Angstroms resolution, crystal 1	7ouz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×BMP; 2×PRO; 2×GOL;
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Human OMPD-domain of UMPS in complex with 6-hydroxy-UMP at 0.95 Angstroms resolution, crystal 2	7otu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×BMP; 4×GOL;
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OMPD-domain of human UMPS in complex with the substrate OMP at 0.99 Angstroms resolution	7am9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×OMP; 2×U; 2×GOL; 12×SO4;
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OMPD-domain of human UMPS in complex with 6-Aza-UMP at 1.0 Angstroms resolution	6zx1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×UP6; 4×PRO; 2×SO4;
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OMPD-domain of human UMPS in complex with UMP at 1.0 Angstroms resolution	6zwy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×U5P; 2×PRO; 4×GOL;
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Human OMPD-domain of UMPS in complex with substrate OMP at 1.05 Angstroms resolution, 20 minutes so…	7oqm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×GOL; 4×SO4; 1×OMP; 2×U;
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Human OMPD-domain of UMPS (K314AcK) in complex with 6-hydroxy-UMP at 1.05 Angstroms resolution	6ywt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×BMP; 4×PRO;
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Human OMPD-domain of UMPS in complex with OMP at 1.05 Angstrom resolution, 5 minutes soaking	7oqf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×GOL; 4×SO4; 2×OMP; 2×U;
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Human OMPD-domain of UMPS in complex with substrate OMP at 1.10 Angstroms resolution, 15 minutes so…	7oqk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×GOL; 4×SO4; 1×OMP; 2×U;
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D312N mutant of human orotidyl-5'-monophosphate decarboxylase in complex with 6-cyano-UMP, covalent…	3eww PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	1×GOL; 2×U1P;
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K314A mutant of human orotidyl-5'-monophosphate decarboxylase soaked with OMP, decarboxylated to UMP	3ewy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	2×U5P; 4×GOL;
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Human OMPD-domain of UMPS in complex with substrate OMP at 1.10 Angstroms resolution, 30 minutes so…	7oqn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×GOL; 4×SO4; 2×U;
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Human OMPD-domain of UMPS in complex with substrate OMP at 1.15 Angstrom resolution, 10 minutes soa…	7oqi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×GOL; 4×SO4; 2×OMP; 2×U;
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OMPD-domain of human UMPS in complex with 6-thiocarboxamido-UMP at 1.15 Angstroms resolution	6zx3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×QRZ; 2×GOL; 2×PRO; 2×SO4;
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OMPD-domain of human UMPS in complex with 6-carboxamido-UMP at 1.2 Angstroms resolution	6zx2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×QRT; 2×PRO; 2×SO4;
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Resting state structure of the OMPD-domain of human UMPS variant (K314AcK) at 1.2 Angstroms resolut…	6zwz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×SO4;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain (Asp312Asn mutant) of huma…	2qcf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	2×5FU; 2×GOL;
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human orotidyl-5'-monophosphate decarboxylase in complex with BMP	3ex4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×BMP;
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Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 0.71 MGy …	6yvk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×OMP; 2×U; 2×GOL; 12×SO4;
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Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 2.13 MGy …	6yvm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×OMP; 2×U; 2×GOL; 12×SO4;
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Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 2.84 MGy …	6yvn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×OMP; 2×U; 2×GOL; 12×SO4;
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Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 1.42 MGy …	6yvl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×OMP; 2×U; 2×GOL; 12×SO4;
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OMPD-domain of human UMPS in complex with the substrate OMP at 1.25 Angstroms resolution	6zx0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×OMP; 2×U; 2×GOL; 8×SO4;
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Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 3.55 MGy …	6yvo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×OMP; 2×U; 2×GOL; 12×SO4;
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D312N mutant of human orotidyl-5'-monophosphate decarboxylase in complex with 6-azido-UMP, covalent…	3ex6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	1×GOL; 2×SO4; 1×CL; 1×U5P;
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Human orotidyl-5'-monophosphate decarboxylase in complex with 6-acetyl-UMP	3l0k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×6AU; 1×GOL;
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human orotidyl-5'-monophosphate decarboxylase soaked with 6-cyano-UMP, converted to UMP	3ex1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	1×U5P; 1×GOL; 1×6CN;
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K314A mutant of human orotidyl-5'-monophosphate decarboxylase in complex with 6-azido-UMP, degraded…	3ewx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	2×BMP; 2×GOL;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase boun…	2qce PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×SO4; 2×CL; 4×GOL;
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human orotidyl-5'-monophosphate decarboxylase in complex with 6-azido-UMP, covalent adduct	3ex3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×U5P; 1×GOL;
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human orotidyl-5'-monophosphate decarboxylase in complex with 6-cyano-UMP	3ex2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×6CN; 1×GOL;
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D312N mutant of human orotidyl-5'-monophosphate decarboxylase in complex with 6-acetyl-UMP, covalen…	3ewu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	1×GOL; 2×UEP; 1×SO4;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain (Asp312Asn mutant) of huma…	2qcm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	2×JW5;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase boun…	2qcg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×5BU;
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Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N3-oxide	4hkp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	6×GOL; 2×TKW; 1×16B;
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Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N4-OH	4hib PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	1×GOL; 2×CL; 2×16B;
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Covalent complex of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase with …	2qcn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	1×SO4; 2×U5P; 2×GOL;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain (Asp312Asn mutant) of huma…	2qcl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	99.61	2×OMP; 1×GOL;
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Human orotidine 5'-phosphate decarboxylase domain of uridine monophospate synthetase (UMPS) in comp…	2v30 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×U5P;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase boun…	2qcd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	2×U5P;
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Human UMP Synthase (C-terminal Domain- Orotidine 5'-Monophosphate Decarboxylase)	2eaw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-479	100	1×SO4;
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Orotidine 5'-monophosphate decarboxylase-domain of human UMPS in complex with the reaction product …	7asq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-478	100	2×GOL; 2×U5P; 4×SO4; 2×NA;
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Human orotidyl-5'-monophosphate decarboxylase in complex with 6-mercapto-UMP	3l0n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-478	100	2×S5P;
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Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase boun…	2qch PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-478	100	2×IOD; 2×5IU; 2×UMP;
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The crystal structure of human orotidine-5'-decarboxylase domain of human uridine monophosphate syn…	2jgy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	224-478	100.0
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Human Orotate phosphoribosyltransferase (OPRTase) domain of Uridine 5' -monophosphate synthase (UMP…	2wns PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	7-203	100	2×OMP; 1×CL;
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Human OMPD-domain of UMPS (K314AcK) in complex with UMP at 1.1 Angstroms resolution	6ywu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	224-479	100	1×U5P; 1×GOL; 1×SO4;
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
3bvj.1.A	homo-2-mer	0.90	223-479	2×XMP;	97.65
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2wns.1.A	homo-2-mer	0.89	8-205	2×OMP;	98.99
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3n2l.1.A	homo-2-mer	0.62	4-204		26.26
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

8 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	3bvj.1.A	homo-2-mer	0.92	45-301	2×XMP;	97.65
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Isoform 2	2wns.1.A	monomer	0.63	1-25		100.00
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Isoform 3	3bvj.1.A	homo-2-mer	0.91	131-387	2×XMP;	97.65
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Isoform 3	2wns.1.A	homo-2-mer	0.78	2-113		98.21
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Isoform 3	3n2l.1.A	homo-2-mer	0.54	1-112		26.36
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Isoform 4	3bvj.1.A	homo-2-mer	0.82	45-204		96.52
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Isoform 4	2wns.1.A	monomer	0.62	1-25		100.00
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Isoform 4	7q1h.1.A	monomer	0.60	136-205		82.86
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P11172 (UMPS_HUMAN) Homo sapiens (Human)

Uridine 5'-monophosphate synthase UniProtKBInterProSTRINGInteractive Modelling

Available Structures

62 Experimental Structures

3 SWISS-MODEL models

8 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Uridine 5'-monophosphate synthase UniProtKB InterPro STRING Interactive Modelling