SMTL ID : 1d9i.1

STRUCTURE OF THROMBIN COMPLEXED WITH SELECTIVE NON-ELECTOPHILIC INHIBITORS HAVING CYCLOHEXYL MOIETIES AT P1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: K.204, D.205, T.207 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.207 NA.2: 3 residues within 4Å: Chain A: D.262, R.263, K.266 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.262, A:K.266

1 x 00P: (5S)-N-[(trans-4-aminocyclohexyl)methyl]-1,3-dioxo-2-[2-(phenylsulfonyl)ethyl]-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazine-5-carboxamide(Non-covalent)

00P.3: 17 residues within 4Å: Chain A: H.73, Y.77, W.80, N.125, I.209, D.229, A.230, C.231, E.232, S.235, V.255, S.256, W.257, G.258, E.259, G.260, C.261 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.77, A:W.80, A:I.209, A:A.230, A:V.255, A:W.257 Hydrogen bonds: A:G.258, A:G.260 Water bridges: A:E.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krishnan, R. et al., Structure of thrombin complexed with selective non-electrophilic inhibitors having cyclohexyl moieties at P1. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-10-30

Peptides

THROMBIN: A
HIRUGEN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
I

THROMBIN

HIRUGEN

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