SMTL ID : 1afe.1

HUMAN ALPHA-THROMBIN INHIBITION BY CBZ-PRO-AZALYS-ONP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: L.46, N.53, T.55 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.53, B:T.55

1 x ALZ: 2-[N'-(4-AMINO-BUTYL)-HYDRAZINOCARBONYL]-PYRROLIDINE-1-CARBOXYLIC ACID BENZYL ESTER(Non-covalent)

ALZ.2: 15 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, I.179, D.199, A.200, C.201, S.205, S.226, W.227, G.228, E.229, G.230, C.231 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:I.179, B:E.229 Hydrogen bonds: B:D.199, B:S.205, B:S.226, B:G.228 Water bridges: B:E.229 pi-Stacking: B:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Simone, G. et al., Human alpha-thrombin inhibition by the highly selective compounds N-ethoxycarbonyl-D-Phe-Pro-alpha-azaLys p-nitrophenyl ester and N-carbobenzoxy-Pro-alpha-azaLys p-nitrophenyl ester: a kinetic, thermodynamic and X-ray crystallographic study. J.Mol.Biol. (1997)

Release Date

1997-12-03

Peptides

ALPHA-THROMBIN (SMALL SUBUNIT): A
ALPHA-THROMBIN (LARGE SUBUNIT): B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

ALPHA-THROMBIN (SMALL SUBUNIT)

ALPHA-THROMBIN (LARGE SUBUNIT)

HIRUGEN

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