SMTL ID : 1ad8.1

COMPLEX OF THROMBIN WITH AND INHIBITOR CONTAINING A NOVEL P1 MOIETY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain B: K.174, T.177 No protein-ligand interaction detected (PLIP)

1 x MDL: [DEHYDROXY-N-METHYL-TYROSYL-PROLINYL]-[4,4,5,5,5-PENTAFLUORO-3-OXY-1-[3-INDOLYL]-PENT-2-YL]AMINE(Covalent)

MDL.2: 22 residues within 4Å: Chain B: L.27, C.28, H.43, C.44, Y.47, W.50, K.52, E.94, N.95, I.179, D.199, A.200, C.201, E.202, G.203, D.204, S.205, V.225, S.226, W.227, G.228, G.238 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:I.179, B:A.200, B:V.225, B:W.227 Hydrogen bonds: B:G.203, B:S.205, B:S.226, B:G.228, B:G.228 Water bridges: B:G.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malikayil, J.A. et al., Molecular design and characterization of an alpha-thrombin inhibitor containing a novel P1 moiety. Biochemistry (1997)

Release Date

1997-11-12

Peptides

THROMBIN (SMALL SUBUNIT): A
THROMBIN (LARGE SUBUNIT): B
HIRUDIN (53-65) PEPTIDE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

THROMBIN (SMALL SUBUNIT)

THROMBIN (LARGE SUBUNIT)

HIRUDIN (53-65) PEPTIDE

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