SMTL ID : 1wbg.1

Active site thrombin inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x L03: 3-(4-CHLOROPHENYL)-5-(METHYLTHIO)-4H-1,2,4-TRIAZOLE(Non-covalent)

L03.1: 11 residues within 4Å: Chain B: D.199, A.200, E.202, V.225, W.227, G.228, G.230, C.231, G.238, F.239, Y.240 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.200, B:V.225 Water bridges: B:G.228, B:G.228, B:G.230

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain B: N.95, I.179, W.227 No protein-ligand interaction detected (PLIP) DMS.3: 5 residues within 4Å: Chain B: L.130, I.167, V.168, R.170, F.186 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.170 DMS.4: 3 residues within 4Å: Chain B: S.176, G.235, K.236 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartshorn, M.J. et al., Fragment-Based Lead Discovery Using X-Ray Crystallography. J.Med.Chem. (2005)

Release Date

2005-01-27

Peptides

THROMBIN LIGHT CHAIN: A
THROMBIN HEAVY CHAIN: B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
I

THROMBIN LIGHT CHAIN

THROMBIN HEAVY CHAIN

HIRUGEN

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